Se‐Ran Jun

2.7k citations

41 papers · 1.7k indexed · 1 hit paper · h-index 18

Impact in

Molecular Medicine top 5%
- Antibiotic Resistance in Bacteria
Endocrinology top 5%

Papers in ⓘ

Molecular Biology 25
- Genomics and Phylogenetic Studies 13
- Gut microbiota and health 7
- Machine Learning in Bioinformatics 3
Infectious Diseases 8
- Antimicrobial Resistance in Staphylococcus 5

Co-authors: Sung‐Hou Kim (5 shared papers)Guohong Wu (4 shared papers)Gregory E. Sims (4 shared papers)David W. Ussery (14 shared papers)Intawat Nookaew (14 shared papers)Loren Hauser (4 shared papers)Ole Lund (3 shared papers)Michael R. Leuze (3 shared papers)
Journals: Proceedings of the National Academy of Sciences (5 papers)BMC Bioinformatics (2 papers)Scientific Reports (1 paper)FEMS Microbiology Reviews (1 paper)Frontiers in Bioengineering and Biotechnology (1 paper)
Partner nations: United States Denmark South Korea

In The Last Decade

Se‐Ran Jun

38 papers receiving 1.7k citations

Hit Papers

align trajectories log scale

Insights from 20 years of bacterial genome sequencing 2015 · 458 citations

Peers

Countries citing papers authored by Se‐Ran Jun

Since Specialization

Citations

This map shows the geographic impact of Se‐Ran Jun's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Se‐Ran Jun with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Se‐Ran Jun more than expected).

Fields of papers citing papers by Se‐Ran Jun

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Se‐Ran Jun. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Se‐Ran Jun. The network helps show where Se‐Ran Jun may publish in the future.

Co-authors

The 25 scholars most cited alongside Se‐Ran Jun, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Se‐Ran Jun Line = papers co-authored together Se‐Ran Jun links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 41 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Insights from 20 years of bacterial genome sequencing Functional & Integrative Genomics ·Miriam Land, Loren Hauser, Se‐Ran Jun, Intawat Nookaew, Michael R. Leuze, Tae-Hyuk Ahn, Tatiana V. Karpinets, Ole Lund, Guruprased Kora, Trudy M. Wassenaar, Suresh Poudel, David W. Ussery Hit paper breakdown →	2015	458
2	Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions Proceedings of the National Academy of Sciences ·Gregory E. Sims, Se‐Ran Jun, Guohong Wu, Sung‐Hou Kim	2009	278
3	Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution Proceedings of the National Academy of Sciences ·Se‐Ran Jun, Gregory E. Sims, Guohong Wu, Sung‐Hou Kim	2009	120
4	Abiotic Stresses Shift Belowground Populus -Associated Bacteria Toward a Core Stress Microbiome mSystems ·Collin M. Timm, Kelsey Carter, Alyssa A. Carrell, Se‐Ran Jun, Sara Jawdy, Jessica M. Vélez, Lee E. Gunter, Zamin K. Yang, Intawat Nookaew, Nancy L. Engle, Tse-Yuan S. Lu, Christopher W. Schadt, Timothy J. Tschaplinski, Mitchel J. Doktycz, Gerald A. Tuskan, Dale A. Pelletier, David J. Weston	2018	93
5	Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104 Applied and Environmental Microbiology ·Pimlapas Leekitcharoenphon, René S. Hendriksen, Simon Le Hello, François‐Xavier Weill, Dorte Lau Baggesen, Se‐Ran Jun, David W. Ussery, Ole Lund, Derrick W. Crook, Daniel J. Wilson, Frank M. Aarestrup	2016	91
6	Sulforaphane prevents age‐associated cardiac and muscular dysfunction through Nrf2 signaling Aging Cell ·Chhanda Bose, Inês Alves, Preeti Singh, Philip Palade, Eugénia Carvalho, Elisabet Børsheim, Se‐Ran Jun, Amrita K. Cheema, Marjan Boerma, Sanjay Awasthi, Sharda P. Singh	2020	90
7	Global mapping of the protein structure space and application in structure-based inference of protein function Proceedings of the National Academy of Sciences ·Jingtong Hou, Se‐Ran Jun, Chao Zhang, Sung‐Hou Kim	2005	80
8	Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method Proceedings of the National Academy of Sciences ·Guohong Wu, Se‐Ran Jun, Gregory E. Sims, Sung‐Hou Kim	2009	53
9	Whole-genome phylogeny of mammals: Evolutionary information in genic and nongenic regions Proceedings of the National Academy of Sciences ·Gregory E. Sims, Se‐Ran Jun, Guohong Wu, Sung‐Hou Kim	2009	50
10	Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment Frontiers in Microbiology ·Collin M. Timm, Alisha G. Campbell, Sagar M. Utturkar, Se‐Ran Jun, Rebecca E. Parales, Watumesa Agustina Tan, Michael S. Robeson, Tse-Yuan S. Lu, Sara Jawdy, Steven D. Brown, David W. Ussery, Christopher W. Schadt, Gerald A. Tuskan, Mitchel J. Doktycz, David J. Weston, Dale A. Pelletier	2015	45
11	PanFP: pangenome-based functional profiles for microbial communities BMC Research Notes ·Se‐Ran Jun, Michael S. Robeson, Loren Hauser, Christopher W. Schadt, Andrey Gorin	2015	40
12	Ebolaviruscomparative genomics FEMS Microbiology Reviews ·Se‐Ran Jun, Michael R. Leuze, Intawat Nookaew, Edward C. Uberbacher, Miriam Land, Qian Zhang, Visanu Wanchai, Juanjuan Chai, Morten Nielsen, Thomas Trolle, Ole Lund, Gregory S. Buzard, Thomas Lin Pedersen, Trudy M. Wassenaar, David W. Ussery	2015	38
13	Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer Scientific Reports ·Qian Zhang, Se‐Ran Jun, Michael R. Leuze, David W. Ussery, Intawat Nookaew	2017	36
14	Quality scores for 32,000 genomes Standards in Genomic Sciences ·Miriam Land, Doug Hyatt, Se‐Ran Jun, Guruprasad Kora, Loren Hauser, Oksana Lukjančenko, David W. Ussery	2014	28
15	Sample storage conditions induce post-collection biases in microbiome profiles BMC Microbiology ·Samir V. Jenkins, Kieng B. Vang, Allen Gies, Robert J. Griffin, Se‐Ran Jun, Intawat Nookaew, Ruud P.M. Dings	2018	26
16	Multi-Omic Analysis Reveals Different Effects of Sulforaphane on the Microbiome and Metabolome in Old Compared to Young Mice Microorganisms ·Se‐Ran Jun, Amrita K. Cheema, Chhanda Bose, Marjan Boerma, Philip Palade, Eugénia Carvalho, Sanjay Awasthi, Sharda P. Singh	2020	19
17	Isolation of AmpC- and extended spectrum β-lactamase-producing Enterobacterales from fresh vegetables in the United States Food Control ·Sun Hee Moon, Zulema Udaondo, Kaleb Z. Abram, Xinhui Li, Xu Yang, Erin DiCaprio, Se‐Ran Jun, En Huang	2021	17
18	Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us? BMC Bioinformatics ·Se‐Ran Jun, Trudy M. Wassenaar, Visanu Wanchai, Preecha Patumcharoenpol, Intawat Nookaew, David W. Ussery	2017	17
19	Effects of Housing Types on Cecal Microbiota of Two Different Strains of Laying Hens During the Late Production Phase Frontiers in Veterinary Science ·Bishnu Adhikari, Se‐Ran Jun, Young Min Kwon, A.S. Kiess, Pratima Adhikari	2020	15
20	KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis Frontiers in Bioengineering and Biotechnology ·Natapol Pornputtapong, Daniel A. Acheampong, Preecha Patumcharoenpol, Piroon Jenjaroenpun, Thidathip Wongsurawat, Se‐Ran Jun, Suganya Yongkiettrakul, Nipa Chokesajjawatee, Intawat Nookaew	2020	11

About Se‐Ran Jun

Se‐Ran Jun is a scholar working on Molecular Biology, Infectious Diseases, Plant Science, Epidemiology and Clinical Biochemistry, having authored 41 papers that have together received 1.7k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (13 papers), Gut microbiota and health (7 papers), Bacterial Identification and Susceptibility Testing (6 papers), Antibiotic Resistance in Bacteria (6 papers), Antimicrobial Resistance in Staphylococcus (5 papers), Bacteriophages and microbial interactions (4 papers), Machine Learning in Bioinformatics (3 papers) and Chromosomal and Genetic Variations (3 papers). The work is most often cited by research in Molecular Medicine (117 citations), Endocrinology (105 citations), Molecular Biology (1.1k citations), Ecology (313 citations) and Food Science (176 citations). Se‐Ran Jun has collaborated with scholars based in United States, Denmark and South Korea. Frequent co-authors include Sung‐Hou Kim, Guohong Wu, Gregory E. Sims, David W. Ussery, Intawat Nookaew, Loren Hauser, Ole Lund, Michael R. Leuze, Trudy M. Wassenaar and Miriam Land. Their work appears in journals such as Proceedings of the National Academy of Sciences, BMC Bioinformatics, Scientific Reports, FEMS Microbiology Reviews and Frontiers in Bioengineering and Biotechnology.

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