Gregory E. Sims

4.4k total citations · 1 hit paper
12 papers, 2.9k citations indexed

About

Gregory E. Sims is a scholar working on Molecular Biology, Materials Chemistry and Genetics. According to data from OpenAlex, Gregory E. Sims has authored 12 papers receiving a total of 2.9k indexed citations (citations by other indexed papers that have themselves been cited), including 9 papers in Molecular Biology, 3 papers in Materials Chemistry and 2 papers in Genetics. Recurrent topics in Gregory E. Sims's work include Genomics and Phylogenetic Studies (5 papers), Protein Structure and Dynamics (3 papers) and Machine Learning in Bioinformatics (3 papers). Gregory E. Sims is often cited by papers focused on Genomics and Phylogenetic Studies (5 papers), Protein Structure and Dynamics (3 papers) and Machine Learning in Bioinformatics (3 papers). Gregory E. Sims collaborates with scholars based in United States, South Korea and France. Gregory E. Sims's co-authors include Yongwook Choi, Sean V. Murphy, Agnes P. Chan, Jason Miller, Sung‐Hou Kim, Guohong Wu, Se‐Ran Jun, Chao Zhang, Sung‐Hou Kim and In‐Geol Choi and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Journal of Clinical Oncology.

In The Last Decade

Gregory E. Sims

12 papers receiving 2.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Predicting the Functional Effect of Amino Acid Substitutions and Indels

2012 2.1k citations Yongwook Choi, Gregory E. Sims et al. PLoS ONE profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Gregory E. Sims United States	11	1.9k	985	248	213	147	12	2.9k
Sergey Korolev United States	26	2.5k 1.3×	767 0.8×	205 0.8×	170 0.8×	144 1.0×	58	3.0k
Daniel Ríos United Kingdom	8	1.8k 0.9×	704 0.7×	259 1.0×	313 1.5×	172 1.2×	14	2.9k
Martin G. Reese United States	20	2.9k 1.5×	1.4k 1.4×	324 1.3×	257 1.2×	227 1.5×	25	4.4k
Mordechai Choder Israel	33	3.2k 1.7×	539 0.5×	313 1.3×	257 1.2×	130 0.9×	58	3.9k
Peter Rogov United States	14	2.0k 1.1×	870 0.9×	228 0.9×	329 1.5×	50 0.3×	15	2.7k
Albert J. Vilella United Kingdom	10	2.1k 1.1×	886 0.9×	661 2.7×	314 1.5×	125 0.9×	11	3.1k
John A. Capra United States	33	3.8k 2.0×	918 0.9×	398 1.6×	267 1.3×	153 1.0×	111	4.9k
Michael F. Berger United States	25	2.9k 1.5×	563 0.6×	295 1.2×	231 1.1×	93 0.6×	44	3.6k
Belinda Giardine United States	28	3.2k 1.7×	734 0.7×	484 2.0×	290 1.4×	196 1.3×	61	4.7k
Jenny M. Kelley United States	11	2.2k 1.2×	646 0.7×	478 1.9×	174 0.8×	156 1.1×	14	3.0k

Countries citing papers authored by Gregory E. Sims

Since Specialization

Citations

This map shows the geographic impact of Gregory E. Sims's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Gregory E. Sims with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Gregory E. Sims more than expected).

Fields of papers citing papers by Gregory E. Sims

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Gregory E. Sims. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Gregory E. Sims. The network helps show where Gregory E. Sims may publish in the future.

Co-authorship network of co-authors of Gregory E. Sims

This figure shows the co-authorship network connecting the top 25 collaborators of Gregory E. Sims. A scholar is included among the top collaborators of Gregory E. Sims based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Gregory E. Sims. Gregory E. Sims is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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12 of 12 papers shown

Cherukuri, Durga, Francesca Fike, Yu Xia, et al.. (2018). RNA sequencing for the detection of MET exon 14 skipping in specimens with splice-site mutations.. Journal of Clinical Oncology. 36(15_suppl). e24178–e24178. 1 indexed citations

Choi, Yongwook, Gregory E. Sims, Sean V. Murphy, Jason Miller, & Agnes P. Chan. (2012). Predicting the Functional Effect of Amino Acid Substitutions and Indels. PLoS ONE. 7(10). e46688–e46688. 2101 indexed citations breakdown →

Dominguez, Samuel R., Gregory E. Sims, David E. Wentworth, et al.. (2012). Genomic analysis of 16 Colorado human NL63 coronaviruses identifies a new genotype, high sequence diversity in the N-terminal domain of the spike gene and evidence of recombination. Journal of General Virology. 93(11). 2387–2398. 22 indexed citations

Sims, Gregory E. & Sung‐Hou Kim. (2011). Whole-genome phylogeny ofEscherichia coli/Shigellagroup by feature frequency profiles (FFPs). Proceedings of the National Academy of Sciences. 108(20). 8329–8334. 117 indexed citations

Sims, Gregory E., Se‐Ran Jun, Guohong Wu, & Sung‐Hou Kim. (2009). Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions. Proceedings of the National Academy of Sciences. 106(8). 2677–2682. 278 indexed citations

Wu, Guohong, Se‐Ran Jun, Gregory E. Sims, & Sung‐Hou Kim. (2009). Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method. Proceedings of the National Academy of Sciences. 106(31). 12826–12831. 53 indexed citations

Sims, Gregory E., Se‐Ran Jun, Guohong Wu, & Sung‐Hou Kim. (2009). Whole-genome phylogeny of mammals: Evolutionary information in genic and nongenic regions. Proceedings of the National Academy of Sciences. 106(40). 17077–17082. 50 indexed citations

Jun, Se‐Ran, Gregory E. Sims, Guohong Wu, & Sung‐Hou Kim. (2009). Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution. Proceedings of the National Academy of Sciences. 107(1). 133–138. 120 indexed citations

Sims, Gregory E. & Sung‐Hou Kim. (2006). A method for evaluating the structural quality of protein models by using higher-order φ–ψ pairs scoring. Proceedings of the National Academy of Sciences. 103(12). 4428–4432. 22 indexed citations

10.

Sims, Gregory E., In‐Geol Choi, & Sung‐Hou Kim. (2005). Protein conformational space in higher order ϕ-Ψ maps. Proceedings of the National Academy of Sciences. 102(3). 618–621. 36 indexed citations

11.

Sims, Gregory E.. (2003). Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes. Nucleic Acids Research. 31(19). 5607–5616. 22 indexed citations

12.

Sims, Gregory E., et al.. (2003). A global representation of the protein fold space. Proceedings of the National Academy of Sciences. 100(5). 2386–2390. 105 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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