Ryotaro Koike

833 citations

33 papers · 603 indexed · h-index 14

Impact in

Structural Biology
Molecular Biology
- Protein Structure and Dynamics
- RNA and protein synthesis mechanisms
- Machine Learning in Bioinformatics
- Bioinformatics and Genomic Networks
- RNA Research and Splicing

Papers in

Cell Biology 10
- Cellular Mechanics and Interactions 7
- Cellular transport and secretion 3
Molecular Biology 30
- Protein Structure and Dynamics 26
- RNA and protein synthesis mechanisms 7
- Machine Learning in Bioinformatics 4
- Bioinformatics and Genomic Networks 4
- RNA Research and Splicing 3

Co-authors: Motonori Ota Akinori Kidera Satoshi Fukuchi Hidekazu Hiroaki Kazuo Hosoda Seiko D. Murakami Yuichiro Maéda Shuichi Takeda
Journals: Proteins Structure Function and Bioinformatics (6 papers)Journal of Molecular Biology (4 papers)Nucleic Acids Research (4 papers)Protein Science (3 papers)PLoS ONE (3 papers)
Partner nations: Japan United States

In The Last Decade

Ryotaro Koike

33 papers receiving 603 citations

Peers

Countries citing papers authored by Ryotaro Koike

Since Specialization

Citations

This map shows the geographic impact of Ryotaro Koike's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ryotaro Koike with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ryotaro Koike more than expected).

Fields of papers citing papers by Ryotaro Koike

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ryotaro Koike. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ryotaro Koike. The network helps show where Ryotaro Koike may publish in the future.

Co-authors

The 25 scholars most cited alongside Ryotaro Koike, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ryotaro Koike Line = papers co-authored together Ryotaro Koike links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Dual‐wield NTPases : A novel protein family mined from AlphaFold DB Protein Science ·Koya Sakuma, Ryotaro Koike, Motonori Ota	2024	2
2	Rational design of phase separating peptides based on phase separating protein sequence of p53 Scientific Reports ·Kiyoto Kamagata, Atsumi Hando, Maulana Ariefai, Nanako Iwaki, Saori Kanbayashi, Ryotaro Koike, Keisuke Ikeda	2023	6
3	Structures and mechanisms of actin ATP hydrolysis Proceedings of the National Academy of Sciences ·Yusuke Kanematsu, Akihiro Narita, Toshiro Oda, Ryotaro Koike, Motonori Ota, Yu Takano, Kei Moritsugu, Ikuko Fujiwara, Kotaro Tanaka, Hideyuki Komatsu, T. Nagae, Nobuhisa Watanabe, Mitsusada Iwasa, Yuichiro Maéda, Shuichi Takeda	2022	19
4	Structural Insights into the Regulation of Actin Capping Protein by Twinfilin C-terminal Tail Journal of Molecular Biology ·Shuichi Takeda, Ryotaro Koike, Ikuko Fujiwara, Akihiro Narita, Makoto Miyata, Motonori Ota, Yuichiro Maéda	2021	7
5	Protein kinases phosphorylate long disordered regions in intrinsically disordered proteins Protein Science ·Ryotaro Koike, Mutsuki Amano, Kozo Kaibuchi, Motonori Ota	2019	10
6	Structural changes of homodimers in the PDB Journal of Structural Biology ·Ryotaro Koike, Takayuki Amemiya, Tatsuya Horii, Motonori Ota	2017	2
7	Motion Tree Delineates Hierarchical Structure of Protein Dynamics Observed in Molecular Dynamics Simulation PLoS ONE ·Kei Moritsugu, Ryotaro Koike, Kouki Yamada, Hiroaki Kato, Akinori Kidera	2015	17
8	Hierarchical domain‐motion analysis of conformational changes in sarcoplasmic reticulum Ca²⁺‐ATPase Proteins Structure Function and Bioinformatics ·Chigusa Kobayashi, Ryotaro Koike, Motonori Ota, Yuji Sugita	2015	4
9	IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners Nucleic Acids Research ·Satoshi Fukuchi, Takayuki Amemiya, Shigetaka Sakamoto, Yukiko Nobe, Kazuo Hosoda, Yumiko Kado, Seiko D. Murakami, Ryotaro Koike, Hidekazu Hiroaki, Motonori Ota	2013	90
10	Cover and spacer insertions: Small nonhydrophobic accessories that assist protein oligomerization Proteins Structure Function and Bioinformatics ·Hafumi Nishi, Ryotaro Koike, Motonori Ota	2011	10
11	Classification and Annotation of the Relationship between Protein Structural Change and Ligand Binding Journal of Molecular Biology ·Takayuki Amemiya, Ryotaro Koike, Sotaro Fuchigami, Mitsunori Ikeguchi, Akinori Kidera	2011	37
12	PSCDB: a database for protein structural change upon ligand binding Nucleic Acids Research ·T. Amemiya, Ryotaro Koike, Akinori Kidera, Motonori Ota	2011	36
13	IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature Nucleic Acids Research ·Satoshi Fukuchi, Shuichi Sakamoto, Yuko Nobe, Seiko D. Murakami, Tôzô Amemiya, Kazuo Hosoda, Ryotaro Koike, Hidekazu Hiroaki, Motonori Ota	2011	79
14	SAHG, a comprehensive database of predicted structures of all human proteins Nucleic Acids Research ·Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota	2010	9
15	Two Distinct Mechanisms for Actin Capping Protein Regulation—Steric and Allosteric Inhibition PLoS Biology ·Shuichi Takeda, Shiho Minakata, Ryotaro Koike, K. Kawahata, Akihiro Narita, Masashi Kitazawa, Motonori Ota, Tohru Yamakuni, Yuichiro Maéda, Yasushi Nitanai	2010	61
16	Alteration of oligomeric state and domain architecture is essential for functional transformation between transferase and hydrolase with the same scaffold Protein Science ·Ryotaro Koike, Akinori Kidera, Motonori Ota	2009	26
17	Protein Structural Change upon Ligand Binding Correlates with Enzymatic Reaction Mechanism Journal of Molecular Biology ·Ryotaro Koike, Takayuki Amemiya, Motonori Ota, Akinori Kidera	2008	19
18	Probabilistic alignment detects remote homology in a pair of protein sequences without homologous sequence information Proteins Structure Function and Bioinformatics ·Ryotaro Koike, Kengo Kinoshita, Akinori Kidera	2006	3
19	Probabilistic description of protein alignments for sequences and structures Proteins Structure Function and Bioinformatics ·Ryotaro Koike, Kengo Kinoshita, Akinori Kidera	2004	4
20	Ring and zipper formation is the key to understanding the structural variety in all‐β proteins FEBS Letters ·Ryotaro Koike, Kengo Kinoshita, Akinori Kidera	2002	5

About Ryotaro Koike

Ryotaro Koike is a scholar working on Cell Biology, Molecular Biology, Materials Chemistry, Biophysics and Food Science, having authored 33 papers that have together received 603 indexed citations. Recurring topics across this work include Protein Structure and Dynamics (26 papers), Enzyme Structure and Function (18 papers), Cellular Mechanics and Interactions (7 papers), RNA and protein synthesis mechanisms (7 papers), Machine Learning in Bioinformatics (4 papers), Bioinformatics and Genomic Networks (4 papers), RNA Research and Splicing (3 papers) and Cellular transport and secretion (3 papers). The work is most often cited by research in Structural Biology (11 citations), Molecular Biology (488 citations), Cell Biology (116 citations), Materials Chemistry (224 citations) and Biophysics (26 citations). Ryotaro Koike has collaborated with scholars based in Japan and United States. Frequent co-authors include Motonori Ota, Akinori Kidera, Satoshi Fukuchi, Hidekazu Hiroaki, Kazuo Hosoda, Seiko D. Murakami, Yuichiro Maéda, Shuichi Takeda, Shigetaka Sakamoto and Yuko Nobe. Their work appears in journals such as Proteins Structure Function and Bioinformatics, Journal of Molecular Biology, Nucleic Acids Research, Protein Science and PLoS ONE.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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