Randall J. Radmer

1.6k citations

14 papers · 1.3k indexed · 1 hit paper · h-index 14

Molecular Biology top 10%
Materials Chemistry
Atomic and Molecular Physics, and Optics top 10%
Biomaterials top 10%
Computational Theory and Mathematics top 5%

Co-authors: Peter A. Kollman Russ B. Altman Vijay S. Pande Teri E. Klein Magdalena Jonikas Rhiju Das Daniel Herschlag Alain Laederach
Topics: Protein Structure and Dynamics (6 papers)Collagen: Extraction and Characterization (4 papers)Enzyme Structure and Function (4 papers)
Cited by: Molecular Biology Biomaterials Computational Theory and Mathematics
Journals: Bioinformatics Biochemistry Biophysical Journal
Partner nations: United States Russia Canada

In The Last Decade

Randall J. Radmer

14 papers receiving 1.3k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation

2012 540 citations Peter Eastman, Mark S. Friedrichs et al. Journal of Chemical Theory and Computation profile →

Peers

Countries citing papers authored by Randall J. Radmer

Since Specialization

Citations

This map shows the geographic impact of Randall J. Radmer's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Randall J. Radmer with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Randall J. Radmer more than expected).

Fields of papers citing papers by Randall J. Radmer

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Randall J. Radmer. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Randall J. Radmer. The network helps show where Randall J. Radmer may publish in the future.

Co-authorship network of co-authors of Randall J. Radmer

This figure shows the co-authorship network connecting the top 25 collaborators of Randall J. Radmer. A scholar is included among the top collaborators of Randall J. Radmer based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Randall J. Radmer. Randall J. Radmer is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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14 of 14 papers shown

#	Work	Indexed citations
1	OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulationbreakdown → 2012 ·Journal of Chemical Theory and Computation ·Peter Eastman,Mark S. Friedrichs,John D. Chodera,Randall J. Radmer,Christopher M. Bruns,Joy P. Ku,Kyle A. Beauchamp,Thomas J. Lane,Lee‐Ping Wang,Diwakar Shukla,(unknown),Mike Houston,Timo Stich,Christoph Klein,Michael R. Shirts,Vijay S. Pande	540
2	MOLECULAR DYNAMICS SIMULATIONS OF THE FULL TRIPLE HELICAL REGION OF COLLAGEN TYPE I PROVIDE AN ATOMIC SCALE VIEW OF THE PROTEIN'S REGIONAL HETEROGENEITY 2010 ·WORLD SCIENTIFIC eBooks ·Dale L. Bodian,Randall J. Radmer,(unknown),Teri E. Klein	18
3	Improving Structure-Based Function Prediction Using Molecular Dynamics 2009 ·Structure ·(unknown),Randall J. Radmer,Russ B. Altman	40
4	Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters 2009 ·RNA ·Magdalena Jonikas,Randall J. Radmer,Alain Laederach,Rhiju Das,(unknown),Daniel Herschlag,Russ B. Altman	262
5	Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models 2009 ·Bioinformatics ·Magdalena Jonikas,Randall J. Radmer,Russ B. Altman	40
6	COMBINING MOLECULAR DYNAMICS AND MACHINE LEARNING TO IMPROVE PROTEIN FUNCTION RECOGNITION 2007 ·PubMed ·(unknown),Randall J. Radmer,Russ B. Altman	16
7	A new set of molecular mechanics parameters for hydroxyproline and its use in molecular dynamics simulations of collagen‐like peptides 2005 ·Journal of Computational Chemistry ·Sanghyun Park,Randall J. Radmer,Teri E. Klein,Vijay S. Pande	70
8	Triple Helical Structure and Stabilization of Collagen-like Molecules with 4(R)-Hydroxyproline in the Xaa Position 2005 ·Biophysical Journal ·Randall J. Radmer,Teri E. Klein	28
9	Severity of Osteogenesis Imperfecta and Structure of a Collagen-like Peptide Modeling a Lethal Mutation Site 2004 ·Biochemistry ·Randall J. Radmer,Teri E. Klein	30
10	Theoretical and Experimental Studies of Biotin Analogues That Bind Almost as Tightly to Streptavidin as Biotin 2002 ·The Journal of Organic Chemistry ·R. W. Dixon,Randall J. Radmer,Bernd Kuhn,Peter A. Kollman,Jaemoon Yang,César Raposo,Craig S. Wilcox,L.A. Klumb,Patrick S. Stayton,Craig A. Behnke,Isolde Le Trong,Ronald E. Stenkamp	21
11	The application of three approximate free energy calculations methods to structure based ligand design: Trypsin and its complex with inhibitors 1998 ·Journal of Computer-Aided Molecular Design ·Randall J. Radmer,Peter A. Kollman	39
12	Can one predict protein stability? An attempt to do so for residue 133 of T4 lysozyme using a combination of free energy derivatives, PROFEC, and free energy perturbation methods 1998 ·Proteins Structure Function and Bioinformatics ·Lu Wang,David L. Veenstra,Randall J. Radmer,Peter A. Kollman	17
13	Free energy calculation methods: A theoretical and empirical comparison of numerical errors and a new method qualitative estimates of free energy changes 1997 ·Journal of Computational Chemistry ·Randall J. Radmer,Peter A. Kollman	83
14	Determination of the relative binding free energies of peptide inhibitors to the HIV-1 protease 1991 ·Journal of Medicinal Chemistry ·David M. Ferguson,Randall J. Radmer,Peter A. Kollman	64

About Randall J. Radmer

Randall J. Radmer is a scholar working on Biomaterials, Virology and Hardware and Architecture, having authored 14 papers that have together received 1.3k indexed citations. Recurring topics across this work include Protein Structure and Dynamics (6 papers), Collagen: Extraction and Characterization (4 papers) and Enzyme Structure and Function (4 papers). The work is most often cited by research in Molecular Biology (906 citations), Biomaterials (121 citations) and Computational Theory and Mathematics (119 citations). Randall J. Radmer has collaborated with scholars based in United States, Russia and Canada. Frequent co-authors include Peter A. Kollman, Russ B. Altman, Vijay S. Pande, Teri E. Klein, Magdalena Jonikas, Rhiju Das, Daniel Herschlag, Alain Laederach, Michael R. Shirts and Mike Houston. Their work appears in journals such as Bioinformatics, Biochemistry and Biophysical Journal.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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