Nicholas H. Putnam

36.7k citations

28 papers · 8.7k indexed · 8 hit papers · h-index 20

Molecular Biology top 1%
Plant Science top 0.2%
Ecology top 1%
Genetics top 2%
Paleontology top 1%

Co-authors: Daniel S. Rokhsar Uffe Hellsten David Goodstein Russell W. Howson Therese Mitros Shengqiang Shu Richard D. Hayes John C. Detter
Topics: Genomics and Phylogenetic Studies (10 papers)Marine Ecology and Invasive Species (7 papers)Protist diversity and phylogeny (4 papers)
Cited by: Paleontology Plant Science Biotechnology
Journals: Science Proceedings of the National Academy of Sciences Nucleic Acids Research
Partner nations: United States Japan France

In The Last Decade

Nicholas H. Putnam

28 papers receiving 8.6k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Phytozome: a comparative platform for green plant genomics

2011 3.8k citations David Goodstein, Shengqiang Shu et al. Nucleic Acids Research profile →
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

2007 1.2k citations Nicholas H. Putnam, Mansi Srivastava et al. Science profile →
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

2004 649 citations Diego Martínez, Luis Larrondo et al. Nature Biotechnology profile →
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

2006 571 citations Héctor García Martín, Natalia Ivanova et al. Nature Biotechnology profile →
Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics

2004 501 citations Steven Hallam, Nicholas H. Putnam et al. Science profile →
The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution

2013 487 citations Joseph F. Ryan, Christine E. Schnitzler et al. Science profile →
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

2016 468 citations Nicholas H. Putnam, Brendan L. O’Connell et al. Genome Research profile →
Deeply conserved synteny resolves early events in vertebrate evolution

2020 231 citations Oleg Simakov, Ferdinand Marlétaz et al. Nature Ecology & Evolution profile →

Peers

Countries citing papers authored by Nicholas H. Putnam

Since Specialization

Citations

This map shows the geographic impact of Nicholas H. Putnam's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Nicholas H. Putnam with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Nicholas H. Putnam more than expected).

Fields of papers citing papers by Nicholas H. Putnam

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Nicholas H. Putnam. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Nicholas H. Putnam. The network helps show where Nicholas H. Putnam may publish in the future.

Co-authorship network of co-authors of Nicholas H. Putnam

This figure shows the co-authorship network connecting the top 25 collaborators of Nicholas H. Putnam. A scholar is included among the top collaborators of Nicholas H. Putnam based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Nicholas H. Putnam. Nicholas H. Putnam is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Deeply conserved synteny resolves early events in vertebrate evolutionbreakdown → 2020 ·Nature Ecology & Evolution ·Oleg Simakov,Ferdinand Marlétaz,Jia‐Xing Yue,Brendan L. O’Connell,Jerry Jenkins,Alexander Brandt,Robert Calef,Che‐Huang Tung,(unknown),Jeremy Schmutz,Nori Satoh,Jr‐Kai Yu,Nicholas H. Putnam,Richard E. Green,Daniel S. Rokhsar	231
2	Structural Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue 2018 ·Journal of Molecular Diagnostics ·Christopher J. Troll,Nicholas H. Putnam,Paul D. Hartley,Brandon Rice,Marco Blanchette,Sameed M. Siddiqui,(unknown),Martin P. Powers,Ramesh Ramakrishnan,Christian A. Kunder,Carlos D. Bustamante,James L. Zehnder,Richard E. Green,Helio A. Costa	8
3	Chromosome-scale shotgun assembly using an in vitro method for long-range linkagebreakdown → 2016 ·Genome Research ·Nicholas H. Putnam,Brendan L. O’Connell,(unknown),Brandon Rice,Marco Blanchette,Robert Calef,Christopher J. Troll,Andrew J. Fields,Paul D. Hartley,Charles W. Sugnet,David Haussler,Daniel S. Rokhsar,Richard E. Green	468
4	Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle 2016 ·Genome Biology and Evolution ·Jia‐Xing Yue,Iryna Kozmiková,Hiroki Ono,Carlos W. Nossa,Zbyněk Kozmík,Nicholas H. Putnam,Jr‐Kai Yu,Linda Z. Holland	21
5	Evolution of the Perlecan/HSPG2 Gene and Its Activation in Regenerating Nematostella vectensis 2015 ·PLoS ONE ·Curtis R. Warren,(unknown),(unknown),(unknown),Nicholas H. Putnam,Mary C. Farach‐Carson	21
6	Timing and Scope of Genomic Expansion within Annelida: Evidence from Homeoboxes in the Genome of the Earthworm Eisenia fetida 2015 ·Genome Biology and Evolution ·(unknown),Carlos W. Nossa,Nicholas H. Putnam,Joseph F. Ryan	34
7	The Transcriptome of an Amphioxus, Asymmetron lucayanum, from the Bahamas: A Window into Chordate Evolution 2014 ·Genome Biology and Evolution ·Jia‐Xing Yue,Jr‐Kai Yu,Nicholas H. Putnam,Linda Z. Holland	53
8	Evolutionary profiling reveals the heterogeneous origins of classes of human disease genes: implications for modeling disease genetics in animals 2014 ·BMC Evolutionary Biology ·Evan K. Maxwell,Christine E. Schnitzler,Paul Havlak,Nicholas H. Putnam,Anh‐Dao Nguyen,R. Travis Moreland,Andreas D. Baxevanis	31
9	Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication 2014 ·GigaScience ·Carlos W. Nossa,Paul Havlak,Jia‐Xing Yue,Jie Lv,(unknown),H. Jane Brockmann,Nicholas H. Putnam	71
10	Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes 2011 ·BMC Bioinformatics ·Jie Lv,Paul Havlak,Nicholas H. Putnam	20
11	Phytozome: a comparative platform for green plant genomicsbreakdown → 2011 ·Nucleic Acids Research ·David Goodstein,Shengqiang Shu,Russell W. Howson,(unknown),Richard D. Hayes,(unknown),Therese Mitros,(unknown),Uffe Hellsten,Nicholas H. Putnam,Daniel S. Rokhsar	3773
12	Domain shuffling and the evolution of vertebrates 2009 ·Genome Research ·Takeshi Kawashima,Shuichi Kawashima,(unknown),(unknown),Masahiko Yoneda,Nicholas H. Putnam,Daniel S. Rokhsar,Minoru Kanehisa,Nori Satoh,Hiroshi Wada	65
13	Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organizationbreakdown → 2007 ·Science ·Nicholas H. Putnam,Mansi Srivastava,Uffe Hellsten,(unknown),Jarrod Chapman,Asaf Salamov,Astrid Terry,Harris Shapiro,Erika Lindquist,Vladimir V. Kapitonov,Jerzy Jurka,Grigory Genikhovich,Igor V. Grigoriev,Susan Lucas,Robert E. Steele,John R. Finnerty,Ulrich Technau,Mark Q. Martindale,Daniel S. Rokhsar	1165
14	Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum 2006 ·Proceedings of the National Academy of Sciences ·Steven Hallam,Konstantinos Konstantinidis,Nicholas H. Putnam,Christa Schleper,Yoh‐ichi Watanabe,Junichi Sugahara,Christina M. Preston,José R. de la Torre,Paul M. Richardson,Edward F. DeLong	348
15	Metagenomic analysis of phosphorus removing sludge communities 2006 ·Queensland's institutional digital repository (The University of Queensland) ·Héctor García Martín,Victor Kunin,(unknown),Falk Warnecke,S. Brook Peterson,Kerrie Barry,Alice C. McHardy,Christine Yeates,Shaomei He,Asaf Salamov,Ernest Szeto,Eileen Dalin,Nicholas H. Putnam,Isidore Rigoutsos,Nikos C. Kyrpides,Linda L. Blackall,Katherine D. McMahon,Philip Hugenholtz,(unknown)	9
16	Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communitiesbreakdown → 2006 ·Nature Biotechnology ·Héctor García Martín,Natalia Ivanova,Victor Kunin,Falk Warnecke,Kerrie Barry,Alice C. McHardy,Christine Yeates,Shaomei He,Asaf Salamov,Ernest Szeto,Eileen Dalin,Nicholas H. Putnam,Harris Shapiro,Jasmyn Pangilinan,Isidore Rigoutsos,Nikos C. Kyrpides,Linda L. Blackall,Katherine D. McMahon,Philip Hugenholtz	571
17	Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis 2005 ·Genome Research ·Eiichi Shoguchi,Takeshi Kawashima,Yutaka Satou,Makoto Hamaguchi,(unknown),Yuji Kohara,Nicholas H. Putnam,Daniel S. Rokhsar,Nori Satoh	40
18	Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomicsbreakdown → 2004 ·Science ·Steven Hallam,Nicholas H. Putnam,Christina M. Preston,John C. Detter,Daniel S. Rokhsar,Paul M. Richardson,Edward F. DeLong	501
19	Applications of statistical physics to genome assembly and protein folding 2004 ·PhDT ·Nicholas H. Putnam	1
20	Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78breakdown → 2004 ·Nature Biotechnology ·Diego Martínez,Luis Larrondo,Nicholas H. Putnam,Maarten D. Sollewijn Gelpke,Katherine Huang,Jarrod Chapman,Kevin G. Helfenbein,(unknown),John C. Detter,Frank W. Larimer,Pedro M. Coutinho,Bernard Henrissat,Randy M. Berka,Dan Cullen,Daniel S. Rokhsar	649

About Nicholas H. Putnam

Nicholas H. Putnam is a scholar working on Paleontology, Biotechnology and Global and Planetary Change, having authored 28 papers that have together received 8.7k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (10 papers), Marine Ecology and Invasive Species (7 papers) and Protist diversity and phylogeny (4 papers). The work is most often cited by research in Paleontology (933 citations), Plant Science (3.8k citations) and Biotechnology (733 citations). Nicholas H. Putnam has collaborated with scholars based in United States, Japan and France. Frequent co-authors include Daniel S. Rokhsar, Uffe Hellsten, David Goodstein, Russell W. Howson, Therese Mitros, Shengqiang Shu, Richard D. Hayes, John C. Detter, Steven Hallam and Paul M. Richardson. Their work appears in journals such as Science, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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