Marta A. S. Perez

1.8k total citations · 2 hit papers
28 papers, 953 citations indexed

About

Marta A. S. Perez is a scholar working on Molecular Biology, Organic Chemistry and Immunology. According to data from OpenAlex, Marta A. S. Perez has authored 28 papers receiving a total of 953 indexed citations (citations by other indexed papers that have themselves been cited), including 21 papers in Molecular Biology, 7 papers in Organic Chemistry and 6 papers in Immunology. Recurrent topics in Marta A. S. Perez's work include Protein Structure and Dynamics (7 papers), vaccines and immunoinformatics approaches (6 papers) and Click Chemistry and Applications (4 papers). Marta A. S. Perez is often cited by papers focused on Protein Structure and Dynamics (7 papers), vaccines and immunoinformatics approaches (6 papers) and Click Chemistry and Applications (4 papers). Marta A. S. Perez collaborates with scholars based in Switzerland, Portugal and United States. Marta A. S. Perez's co-authors include Vincent Zoete, Olivier Michielin, Antoine Daina, Pedro Alexandrino Fernandes, Ute F. Röhrig, Maria J. Ramos, Marine Bugnon, Mathilde Goullieux, George Coukos and Alexandre Harari and has published in prestigious journals such as Journal of the American Chemical Society, Nucleic Acids Research and Immunity.

In The Last Decade

Marta A. S. Perez

27 papers receiving 937 citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

SwissDock 2024: major enhancements for small-molecule docking with Attracting Cavities and AutoDock Vina

2024 159 citations Marine Bugnon, Ute F. Röhrig et al. Nucleic Acids Research profile →
SwissParam 2023: A Modern Web-Based Tool for Efficient Small Molecule Parametrization

2023 108 citations Marine Bugnon, Mathilde Goullieux et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Marta A. S. Perez Switzerland	14	445	157	146	132	130	28	953
Jennifer M. Chambers Australia	13	583 1.3×	58 0.4×	112 0.8×	120 0.9×	110 0.8×	16	1.1k
Lisa Yan United States	18	787 1.8×	137 0.9×	164 1.1×	56 0.4×	132 1.0×	27	1.3k
Antonio Morreale Spain	23	762 1.7×	234 1.5×	198 1.4×	126 1.0×	106 0.8×	62	1.5k
Aravindhan Ganesan Canada	15	433 1.0×	78 0.5×	217 1.5×	66 0.5×	86 0.7×	41	930
Cédric Grauffel Taiwan	19	897 2.0×	83 0.5×	174 1.2×	75 0.6×	198 1.5×	45	1.5k
John D. Bickel United States	2	1.0k 2.3×	78 0.5×	217 1.5×	114 0.9×	92 0.7×	5	1.4k
Angela N. Migues United States	5	997 2.2×	78 0.5×	208 1.4×	115 0.9×	92 0.7×	6	1.5k
Robert Fraczkiewicz United States	10	828 1.9×	63 0.4×	160 1.1×	141 1.1×	118 0.9×	16	1.3k
Glyn Williams United Kingdom	18	830 1.9×	112 0.7×	380 2.6×	98 0.7×	131 1.0×	37	1.3k
Andras Boeszoermenyi United States	19	923 2.1×	88 0.6×	254 1.7×	110 0.8×	89 0.7×	28	1.5k

Countries citing papers authored by Marta A. S. Perez

Since Specialization

Citations

This map shows the geographic impact of Marta A. S. Perez's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Marta A. S. Perez with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Marta A. S. Perez more than expected).

Fields of papers citing papers by Marta A. S. Perez

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Marta A. S. Perez. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Marta A. S. Perez. The network helps show where Marta A. S. Perez may publish in the future.

Co-authorship network of co-authors of Marta A. S. Perez

This figure shows the co-authorship network connecting the top 25 collaborators of Marta A. S. Perez. A scholar is included among the top collaborators of Marta A. S. Perez based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Marta A. S. Perez. Marta A. S. Perez is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Croce, Giancarlo, Sara Bobisse, Maiia E. Bragina, et al.. (2025). Phage display enables machine learning discovery of cancer antigen–specific TCRs. Science Advances. 11(24). eads5589–eads5589. 2 indexed citations

Bugnon, Marine, et al.. (2025). A fingerprint approach to pioneer structure-based T cell receptor repertoire analysis and specificity prediction. Frontiers in Immunology. 16. 1688805–1688805. 1 indexed citations

Bugnon, Marine, Ute F. Röhrig, Mathilde Goullieux, et al.. (2024). SwissDock 2024: major enhancements for small-molecule docking with Attracting Cavities and AutoDock Vina. Nucleic Acids Research. 52(W1). W324–W332. 159 indexed citations breakdown →

Perez, Marta A. S., Johanna Chiffelle, Sara Bobisse, et al.. (2024). Predicting Antigen‐Specificities of Orphan T Cell Receptors from Cancer Patients with TCRpcDist. Advanced Science. 11(40). e2405949–e2405949. 5 indexed citations

Racle, Julien, Philippe Guillaume, Julien Schmidt, et al.. (2023). Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes. Immunity. 56(6). 1359–1375.e13. 65 indexed citations

Perez, Marta A. S., Michel A. Cuendet, Ute F. Röhrig, Olivier Michielin, & Vincent Zoete. (2022). Structural Prediction of Peptide–MHC Binding Modes. Methods in molecular biology. 2405. 245–282. 9 indexed citations

Graciotti, Michele, Fabio Marino, HuiSong Pak, et al.. (2020). Deciphering the Mechanisms of Improved Immunogenicity of Hypochlorous Acid-Treated Antigens in Anti-Cancer Dendritic Cell-Based Vaccines. Vaccines. 8(2). 271–271. 15 indexed citations

Chiffelle, Johanna, Raphaël Genolet, Marta A. S. Perez, et al.. (2020). T-cell repertoire analysis and metrics of diversity and clonality. Current Opinion in Biotechnology. 65. 284–295. 105 indexed citations

Perez, Marta A. S., Michal Bassani‐Sternberg, George Coukos, David Gfeller, & Vincent Zoete. (2019). Analysis of Secondary Structure Biases in Naturally Presented HLA-I Ligands. Frontiers in Immunology. 10. 2731–2731. 7 indexed citations

10.

Scutelnic, Valeriu, Marta A. S. Perez, Mateusz Marianski, et al.. (2018). The Structure of the Protonated Serine Octamer. Journal of the American Chemical Society. 140(24). 7554–7560. 65 indexed citations

11.

Brunk, Elizabeth, Marta A. S. Perez, Prashanth Athri, & Ursula Röthlisberger. (2016). Genetic‐Algorithm‐Based Optimization of a Peptidic Scaffold for Sequestration and Hydration of CO₂. ChemPhysChem. 17(23). 3831–3835. 3 indexed citations

12.

Masson, Antoine, Michael Z. Kamrath, Marta A. S. Perez, et al.. (2015). Infrared Spectroscopy of Mobility-Selected H⁺-Gly-Pro-Gly-Gly (GPGG). Journal of the American Society for Mass Spectrometry. 26(9). 1444–1454. 65 indexed citations

13.

Astani, Negar Ashari, Nicholas J. Browning, Elizabeth Brunk, et al.. (2014). Lessons from Nature: Computational Design of Biomimetic Compounds and Processes. CHIMIA International Journal for Chemistry. 68(9). 642–642. 6 indexed citations

14.

Rienzo, Francesca De, Arménio Jorge Moura Barbosa, Marta A. S. Perez, et al.. (2012). The extracellular subunit interface of the 5-HT₃receptors: a computational alanine scanning mutagenesis study. Journal of Biomolecular Structure and Dynamics. 30(3). 280–298. 5 indexed citations

15.

Silva, Pedro J., et al.. (2012). Improving the study of proton transfers between amino acid side chains in solution: choosing appropriate DFT functionals and avoiding hidden pitfalls. Theoretical Chemistry Accounts. 131(3). 8 indexed citations

16.

Perez, Marta A. S., Sérgio F. Sousa, Eduardo F. Oliveira, Pedro Alexandrino Fernandes, & Maria J. Ramos. (2011). Detection of Farnesyltransferase Interface Hot Spots through Computational Alanine Scanning Mutagenesis. The Journal of Physical Chemistry B. 115(51). 15339–15354. 6 indexed citations

17.

Perez, Marta A. S., Pedro Alexandrino Fernandes, & Maria J. Ramos. (2010). Understanding the Mechanism for Ribonucleotide Reductase Inactivation by 2′- Deoxy-2′-methylenecytidine-5′-diphosphate. Journal of Chemical Theory and Computation. 6(9). 2770–2781. 7 indexed citations

18.

Perez, Marta A. S., Nuno M. F. S. A. Cerqueira, Pedro Alexandrino Fernandes, & Maria J. Ramos. (2010). Ribonucleotide Reductase: A Mechanistic Portrait of Substrate Analogues Inhibitors. Current Medicinal Chemistry. 17(26). 2854–2872. 12 indexed citations

19.

Perez, Marta A. S., Pedro Alexandrino Fernandes, & Maria J. Ramos. (2010). Substrate Recognition in HIV-1 Protease: A Computational Study. The Journal of Physical Chemistry B. 114(7). 2525–2532. 18 indexed citations

20.

Perez, Marta A. S., Pedro Alexandrino Fernandes, & Maria J. Ramos. (2007). Drug design: New inhibitors for HIV-1 protease based on Nelfinavir as lead. Journal of Molecular Graphics and Modelling. 26(3). 634–642. 8 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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