Marie‐Dominique Devignes

4.3k total citations · 2 hit papers
88 papers, 2.1k citations indexed

About

Marie‐Dominique Devignes is a scholar working on Molecular Biology, Artificial Intelligence and Computational Theory and Mathematics. According to data from OpenAlex, Marie‐Dominique Devignes has authored 88 papers receiving a total of 2.1k indexed citations (citations by other indexed papers that have themselves been cited), including 68 papers in Molecular Biology, 16 papers in Artificial Intelligence and 14 papers in Computational Theory and Mathematics. Recurrent topics in Marie‐Dominique Devignes's work include Biomedical Text Mining and Ontologies (25 papers), Bioinformatics and Genomic Networks (16 papers) and Protein Structure and Dynamics (12 papers). Marie‐Dominique Devignes is often cited by papers focused on Biomedical Text Mining and Ontologies (25 papers), Bioinformatics and Genomic Networks (16 papers) and Protein Structure and Dynamics (12 papers). Marie‐Dominique Devignes collaborates with scholars based in France, United States and Austria. Marie‐Dominique Devignes's co-authors include David W. Ritchie, Malika Smaïl‐Tabbone, Lazaros Mavridis, Vishwesh Venkatraman, Sabeur Aridhi, Silvio Danese, Catherine Le Berre, Laure Fournier, William J. Sandborn and Laurent Peyrin‐Biroulet and has published in prestigious journals such as Nucleic Acids Research, SHILAP Revista de lepidopterología and Bioinformatics.

In The Last Decade

Marie‐Dominique Devignes

72 papers receiving 2.0k citations

Hit Papers

HexServer: an FFT-based protein docking server powered by... 2010 2026 2015 2020 2010 2019 100 200 300 400 500
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. HexServer: an FFT-based protein docking server powered by graphics processors
    2010 511 citations Marie‐Dominique Devignes, David W. Ritchie et al. profile →
  2. Application of Artificial Intelligence to Gastroenterology and Hepatology
    2019 333 citations Sabeur Aridhi, Marie‐Dominique Devignes et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Marie‐Dominique Devignes France 22 1.0k 254 206 200 189 88 2.1k
Sun Kim South Korea 27 1.4k 1.4× 287 1.1× 223 1.1× 117 0.6× 106 0.6× 173 2.7k
Neema Jamshidi United States 32 2.8k 2.8× 273 1.1× 215 1.0× 205 1.0× 410 2.2× 71 4.0k
Baolin Wu United States 32 2.0k 2.0× 196 0.8× 114 0.6× 408 2.0× 97 0.5× 141 3.8k
Bin Chen China 30 1.6k 1.6× 489 1.9× 167 0.8× 147 0.7× 145 0.8× 137 2.8k
George M. Spyrou Greece 24 1.6k 1.6× 297 1.2× 571 2.8× 286 1.4× 331 1.8× 165 3.0k
Xiangqian Guo China 28 1.7k 1.7× 639 2.5× 117 0.6× 232 1.2× 182 1.0× 110 3.6k
Σοφία Κοσσίδα Greece 22 1.2k 1.2× 148 0.6× 183 0.9× 124 0.6× 62 0.3× 100 2.0k
Federico Goodsaid United States 25 1.1k 1.1× 165 0.6× 224 1.1× 224 1.1× 67 0.4× 60 2.3k
Jennifer Fostel United States 30 2.0k 2.0× 333 1.3× 243 1.2× 161 0.8× 45 0.2× 54 3.1k
Liang Fang China 32 1.9k 1.9× 385 1.5× 81 0.4× 183 0.9× 104 0.6× 145 2.9k

Countries citing papers authored by Marie‐Dominique Devignes

Since Specialization
Citations

This map shows the geographic impact of Marie‐Dominique Devignes's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Marie‐Dominique Devignes with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Marie‐Dominique Devignes more than expected).

Fields of papers citing papers by Marie‐Dominique Devignes

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Marie‐Dominique Devignes. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Marie‐Dominique Devignes. The network helps show where Marie‐Dominique Devignes may publish in the future.

Co-authorship network of co-authors of Marie‐Dominique Devignes

This figure shows the co-authorship network connecting the top 25 collaborators of Marie‐Dominique Devignes. A scholar is included among the top collaborators of Marie‐Dominique Devignes based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Marie‐Dominique Devignes. Marie‐Dominique Devignes is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Smaïl‐Tabbone, Malika, et al.. (2024). HLA-EpiCheck: novel approach for HLA B-cell epitope prediction using 3D-surface patch descriptors derived from molecular dynamic simulations. Bioinformatics Advances. 4(1). vbae186–vbae186.
2.
Devignes, Marie‐Dominique, et al.. (2023). Experiences with a training DSW knowledge model for early-stage researchers. SHILAP Revista de lepidopterología. 3. 97–97. 1 indexed citations
3.
Bresso, Emmanuel, João Pedro Ferreira, Nicolas Girerd, et al.. (2022). Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project. Journal of Biomedical Informatics. 135. 104212–104212. 1 indexed citations
4.
Vuillon, Laurent, Laurent Chaloin, Olivier Moncorgé, et al.. (2022). Singular Interface Dynamics of the SARS-CoV-2 Delta Variant Explained with Contact Perturbation Analysis. Journal of Chemical Information and Modeling. 62(12). 3107–3122. 6 indexed citations
5.
Aridhi, Sabeur, João P. P. Gomes, José Antônio Fernandes de Macêdo, et al.. (2021). On the design of a similarity function for sparse binary data with application on protein function annotation. Knowledge-Based Systems. 238. 107863–107863. 1 indexed citations
6.
Alborzi, Seyed Ziaeddin, et al.. (2021). PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions. PLoS Computational Biology. 17(8). e1008844–e1008844. 11 indexed citations
7.
Coluzzi, Charles, Gérard Guédon, Marie‐Dominique Devignes, et al.. (2017). A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Frontiers in Microbiology. 8. 443–443. 35 indexed citations
8.
Bonnet, Céline, Asma Ali Khan, Emmanuel Bresso, et al.. (2013). Extended spectrum of MBD5 mutations in neurodevelopmental disorders. European Journal of Human Genetics. 21(12). 1457–1461. 30 indexed citations
9.
Devignes, Marie‐Dominique, et al.. (2012). Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis. International Journal of Computational Biology and Drug Design. 5(3/4). 245–245. 4 indexed citations
10.
Benabderrahmane, Sidahmed, Malika Smaïl‐Tabbone, Olivier Poch, Amedeo Napoli, & Marie‐Dominique Devignes. (2010). IntelliGO: a new vector-based semantic similarity measure including annotation origin. BMC Bioinformatics. 11(1). 588–588. 70 indexed citations
11.
Coulet, Adrien, Malika Smaïl‐Tabbone, Amedeo Napoli, & Marie‐Dominique Devignes. (2008). Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics. HAL (Le Centre pour la Communication Scientifique Directe). 4 indexed citations
12.
Devignes, Marie‐Dominique, et al.. (2006). BR-Explorer: An FCA-based algorithm for Information Retrieval. HAL (Le Centre pour la Communication Scientifique Directe). 5 indexed citations
13.
Coulet, Adrien, Malika Smaïl‐Tabbone, Pascale Benlian, Amedeo Napoli, & Marie‐Dominique Devignes. (2006). SNP-Ontology for semantic integration of genomic variation data. HAL (Le Centre pour la Communication Scientifique Directe). 4 indexed citations
14.
Devignes, Marie‐Dominique, et al.. (2006). BR-Explorer: A sound and complete FCA-based retrieval algorithm (Poster). HAL (Le Centre pour la Communication Scientifique Directe). 2 indexed citations
15.
Murad, Hossam, Philippe Collet, Hervé Schohn, et al.. (2006). Immunoselection and characterization of a human genomic PPAR binding fragment located within POTE genes. Biochimie. 89(3). 329–336. 4 indexed citations
16.
Devignes, Marie‐Dominique & Malika Smaïl‐Tabbone. (2004). Integration of biological data from web resources : management of multiple answers through metadata retrieval. HAL (Le Centre pour la Communication Scientifique Directe). 3. 1 indexed citations
17.
Devignes, Marie‐Dominique, et al.. (2003). A Generic Solution for Automated Collecting and Integration of Biological Data from Web Sources. HAL (Le Centre pour la Communication Scientifique Directe). 2. 1 indexed citations
18.
Piétu, Geneviève, Éric Eveno, Régine Mariage‐Samson, et al.. (1999). The Genexpress IMAGE Knowledge Base of the Human Muscle Transcriptome: A Resource of Structural, Functional, and Positional Candidate Genes for Muscle Physiology and Pathologies. Genome Research. 9(12). 1313–1320. 39 indexed citations
19.
Devignes, Marie‐Dominique, et al.. (1995). Regional assignment of 68 new human gene transcripts on chromosome 11.. Genome Research. 5(1). 60–70. 9 indexed citations
20.
Valle, Rosaura P.C., Gabrièle Drugeon, Marie‐Dominique Devignes, Andrzej B. Legocki, & Anne‐Lise Haenni. (1992). Codon context effect in virus translational readthrough A study in vitro of the determinants of TMV and Mo‐MuLV amber suppression. FEBS Letters. 306(2-3). 133–139. 31 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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