Jonathan Barnoud

5.6k total citations · 1 hit paper
34 papers, 2.5k citations indexed

About

Jonathan Barnoud is a scholar working on Molecular Biology, Materials Chemistry and Biomedical Engineering. According to data from OpenAlex, Jonathan Barnoud has authored 34 papers receiving a total of 2.5k indexed citations (citations by other indexed papers that have themselves been cited), including 22 papers in Molecular Biology, 9 papers in Materials Chemistry and 8 papers in Biomedical Engineering. Recurrent topics in Jonathan Barnoud's work include Lipid Membrane Structure and Behavior (16 papers), Protein Structure and Dynamics (10 papers) and Nanopore and Nanochannel Transport Studies (8 papers). Jonathan Barnoud is often cited by papers focused on Lipid Membrane Structure and Behavior (16 papers), Protein Structure and Dynamics (10 papers) and Nanopore and Nanochannel Transport Studies (8 papers). Jonathan Barnoud collaborates with scholars based in Netherlands, France and United Kingdom. Jonathan Barnoud's co-authors include Luca Monticelli, Giulia Rossi, Manuel N. Melo, Oliver Beckstein, Tyler Reddy, Richard Gowers, Ian M. Kenney, Max Linke, Sean L. Seyler and Jan Domański and has published in prestigious journals such as Physical Review Letters, The Journal of Chemical Physics and Advanced Functional Materials.

In The Last Decade

Jonathan Barnoud

33 papers receiving 2.4k citations

Hit Papers

MDAnalysis: A Python Package for the Rapid Analysis of Mo... 2016 2026 2019 2022 2016 250 500 750 1000
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations
    2016 1.1k citations Richard Gowers, Max Linke et al. Proceedings of the Python in Science Conferences profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Jonathan Barnoud Netherlands 20 1.4k 480 318 293 267 34 2.5k
Wenfei Li China 29 1.8k 1.3× 621 1.3× 345 1.1× 165 0.6× 112 0.4× 135 2.8k
Lijiang Yang China 28 1.5k 1.1× 645 1.3× 239 0.8× 279 1.0× 51 0.2× 81 2.6k
Andrew E. Whitten Australia 31 1.1k 0.8× 1.0k 2.2× 246 0.8× 279 1.0× 90 0.3× 86 2.9k
Lu Zhang China 31 971 0.7× 486 1.0× 529 1.7× 192 0.7× 73 0.3× 137 3.4k
Paulo C. T. Souza Netherlands 28 2.1k 1.5× 546 1.1× 409 1.3× 226 0.8× 30 0.1× 75 3.4k
Martin Held Switzerland 27 2.2k 1.6× 374 0.8× 298 0.9× 134 0.5× 123 0.5× 63 3.5k
Sébastien Buchoux France 14 1.2k 0.9× 203 0.4× 310 1.0× 136 0.5× 40 0.1× 24 1.9k
Wei‐Feng Xue United Kingdom 28 2.0k 1.4× 564 1.2× 240 0.8× 132 0.5× 66 0.2× 56 3.1k
Andrea Danani Switzerland 28 1.2k 0.8× 431 0.9× 283 0.9× 253 0.9× 30 0.1× 85 2.3k

Countries citing papers authored by Jonathan Barnoud

Since Specialization
Citations

This map shows the geographic impact of Jonathan Barnoud's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonathan Barnoud with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonathan Barnoud more than expected).

Fields of papers citing papers by Jonathan Barnoud

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonathan Barnoud. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonathan Barnoud. The network helps show where Jonathan Barnoud may publish in the future.

Co-authorship network of co-authors of Jonathan Barnoud

This figure shows the co-authorship network connecting the top 25 collaborators of Jonathan Barnoud. A scholar is included among the top collaborators of Jonathan Barnoud based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jonathan Barnoud. Jonathan Barnoud is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Barnoud, Jonathan, Oliver Beckstein, Richard Gowers, et al.. (2023). Building a community-driven ecosystem for fast, reproducible, and reusable molecular simulation analysis using mdanalysis. Biophysical Journal. 122(3). 420a–420a. 4 indexed citations
2.
Borges-Araújo, Luís, Tuǧba N. Öztürk, Balázs Fábián, et al.. (2023). Martini 3 Coarse-Grained Force Field for Cholesterol. Journal of Chemical Theory and Computation. 19(20). 7387–7404. 46 indexed citations
3.
Kenney, Ian M., et al.. (2023). MDAKits: A Framework for FAIR-Compliant Molecular Simulation Analysis. Proceedings of the Python in Science Conferences. 76–84. 2 indexed citations
4.
Barnoud, Jonathan, Oliver Beckstein, Cédric Bouysset, et al.. (2022). MDAnalysis 2.0 and beyond: fast and interoperable, community driven simulation analysis. Biophysical Journal. 121(3). 272a–273a. 32 indexed citations
5.
Gale, Ella, et al.. (2022). The emerging potential of interactive virtual reality in drug discovery. Expert Opinion on Drug Discovery. 17(7). 685–698. 18 indexed citations
6.
Alessandri, Riccardo, Jonathan Barnoud, Anders S. Gertsen, et al.. (2021). Martini 3 Coarse‐Grained Force Field: Small Molecules. Advanced Theory and Simulations. 5(1). 116 indexed citations
7.
Cox, Charles D., Jonathan Barnoud, Jingyuan Li, et al.. (2020). Piezo1 Forms Specific, Functionally Important Interactions with Phosphoinositides and Cholesterol. Biophysical Journal. 119(8). 1683–1697. 70 indexed citations
8.
Khan, Hanif M., Paulo C. T. Souza, Sebastian Thallmair, et al.. (2020). Capturing Choline–Aromatics Cation−π Interactions in the MARTINI Force Field. Journal of Chemical Theory and Computation. 16(4). 2550–2560. 40 indexed citations
9.
Barnoud, Jonathan, et al.. (2020). Size-dependent aggregation of hydrophobic nanoparticles in lipid membranes. Nanoscale. 12(17). 9452–9461. 18 indexed citations
10.
Deeks, Helen M., et al.. (2020). Interactive Molecular Dynamics in Virtual Reality Is an Effective Tool for Flexible Substrate and Inhibitor Docking to the SARS-CoV-2 Main Protease. Journal of Chemical Information and Modeling. 60(12). 5803–5814. 37 indexed citations
11.
Angst, Delphine, Jonathan Barnoud, Raphaël Cornette, & Anusuya Chinsamy. (2019). Sex and Ontogenetic Variation in the Crest of Numida meleagris: Implications for Crested Vertebrates. The Anatomical Record. 303(4). 1018–1034. 11 indexed citations
12.
Cox, Charles D., et al.. (2019). Understanding Piezo1's Relationship with Lipids. Biophysical Journal. 116(3). 459a–459a. 1 indexed citations
13.
Liu, Yang, Jonathan Barnoud, & ‪Siewert J. Marrink. (2019). Gangliosides Destabilize Lipid Phase Separation in Multicomponent Membranes. Biophysical Journal. 117(7). 1215–1223. 12 indexed citations
14.
Kroon, P., Tsjerk A. Wassenaar, Jonathan Barnoud, & ‪Siewert J. Marrink. (2018). New Automated and High-throughput Tools for the Martini Forcefield. Biophysical Journal. 114(3). 676a–677a. 1 indexed citations
15.
Barnoud, Jonathan, Hubert Santuz, Pierrick Craveur, et al.. (2017). PBxplore: a tool to analyze local protein structure and deformability with Protein Blocks. PeerJ. 5. e4013–e4013. 33 indexed citations
16.
Gowers, Richard, Max Linke, Jonathan Barnoud, et al.. (2016). MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations. Proceedings of the Python in Science Conferences. 98–105. 1133 indexed citations breakdown →
17.
Barnoud, Jonathan & Luca Monticelli. (2014). Coarse-Grained Force Fields for Molecular Simulations. Methods in molecular biology. 1215. 125–149. 19 indexed citations
18.
Castillo, Norberto, Luca Monticelli, Jonathan Barnoud, & D. Peter Tieleman. (2013). Free energy of WALP23 dimer association in DMPC, DPPC, and DOPC bilayers. Chemistry and Physics of Lipids. 169. 95–105. 110 indexed citations
19.
Monticelli, Luca, Jonathan Barnoud, Adam Orłowski, & Ilpo Vattulainen. (2012). Interaction of C70 fullerene with the Kv1.2 potassium channel. Physical Chemistry Chemical Physics. 14(36). 12526–12526. 17 indexed citations
20.
Rossi, Giulia, Patrick Fuchs, Jonathan Barnoud, & Luca Monticelli. (2012). A Coarse-Grained MARTINI Model of Polyethylene Glycol and of Polyoxyethylene Alkyl Ether Surfactants. The Journal of Physical Chemistry B. 116(49). 14353–14362. 95 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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