Jean−Fred Fontaine

2.5k citations

63 papers · 1.6k indexed · h-index 21

Molecular Biology top 10%
Cellular and Molecular Neuroscience top 10%
Cancer Research top 10%
Computational Theory and Mathematics top 5%
Genetics

Co-authors: Miguel A. Andrade‐Navarro Martin H. Schaefer Erich E. Wanker Adriano Barbosa-Silva Pablo Porras Arunachalam Vinayagam Enrique M. Muro Yves Malthièry
Topics: Bioinformatics and Genomic Networks (16 papers)Allergic Rhinitis and Sensitization (13 papers)Food Allergy and Anaphylaxis Research (12 papers)
Cited by: Molecular Biology Cancer Research Computational Theory and Mathematics
Journals: Proceedings of the National Academy of Sciences Nucleic Acids Research Journal of Clinical Investigation
Partner nations: Germany France United States

In The Last Decade

Jean−Fred Fontaine

60 papers receiving 1.6k citations

Peers

Countries citing papers authored by Jean−Fred Fontaine

Since Specialization

Citations

This map shows the geographic impact of Jean−Fred Fontaine's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jean−Fred Fontaine with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jean−Fred Fontaine more than expected).

Fields of papers citing papers by Jean−Fred Fontaine

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jean−Fred Fontaine. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jean−Fred Fontaine. The network helps show where Jean−Fred Fontaine may publish in the future.

Co-authorship network of co-authors of Jean−Fred Fontaine

This figure shows the co-authorship network connecting the top 25 collaborators of Jean−Fred Fontaine. A scholar is included among the top collaborators of Jean−Fred Fontaine based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jean−Fred Fontaine. Jean−Fred Fontaine is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Overlooked poor-quality patient samples in sequencing data impair reproducibility of published clinically relevant datasets 2024 ·Genome biology ·(unknown),(unknown),Miguel A. Andrade‐Navarro,Jean−Fred Fontaine	1
2	Summary of the worldwide available crop disease risk simulation studies that were driven by climate change scenarios and published during the past 20 years 2022 ·Plant Pathology ·Peter Juroszek,(unknown),Jean−Fred Fontaine,P. Racca,B. Kleinhenz	10
3	Single-cell specific and interpretable machine learning models for sparse scChIP-seq data imputation 2022 ·PLoS ONE ·Steffen Albrecht,Tommaso Andreani,Miguel A. Andrade‐Navarro,Jean−Fred Fontaine	2
4	Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality 2022 ·BMC Bioinformatics ·(unknown),Miguel A. Andrade‐Navarro,Jean−Fred Fontaine	35
5	Posttranslational modifications by ADAM10 shape myeloid antigen-presenting cell homeostasis in the splenic marginal zone 2021 ·Proceedings of the National Academy of Sciences ·(unknown),Jean−Fred Fontaine,Matthias Klein,Thomas Hieronymus,Florian Wanke,Florian C. Kurschus,Andreas Ludwig,Carl F. Ware,Paul Säftig,Tobias Bopp,Björn E. Clausen,Ronald A. Backer	7
6	seqQscorer: automated quality control of next-generation sequencing data using machine learning 2021 ·Genome biology ·Steffen Albrecht,(unknown),Miguel A. Andrade‐Navarro,Jean−Fred Fontaine	11
7	Computational identification of cell-specific variable regions in ChIP-seq data 2020 ·Nucleic Acids Research ·Tommaso Andreani,Steffen Albrecht,Jean−Fred Fontaine,Miguel A. Andrade‐Navarro	4
8	TAF-ChIP: an ultra-low input approach for genome-wide chromatin immunoprecipitation assay 2019 ·Life Science Alliance ·Junaid Akhtar,Piyush More,Steffen Albrecht,Fédérico Marini,Waldemar Kaiser,(unknown),Leszek Wojnowski,Jean−Fred Fontaine,Miguel A. Andrade‐Navarro,Marion Silies,Christian Berger	8
9	Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets 2019 ·PLoS ONE ·(unknown),Jean−Fred Fontaine,Ralf Mrowka,Miguel A. Andrade‐Navarro	0
10	Evaluation of in vivo and in vitro models of toxicity by comparison of toxicogenomics data with the literature 2017 ·Methods ·(unknown),Jean−Fred Fontaine,Ralf Mrowka,Miguel A. Andrade‐Navarro	8
11	Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate 2017 ·Cell Systems ·(unknown),Jonathan Woodsmith,Federico Apelt,Jean−Fred Fontaine,David Meierhofer,Johannes Helmuth,Arndt Großmann,Miguel A. Andrade‐Navarro,Bryan A. Ballif,Ulrich Stelzl	11
12	Assessment of curated phenotype mining in neuropsychiatric disorder literature 2014 ·Methods ·Jean−Fred Fontaine,Josef Priller,Eike Spruth,Carol Perez‐Iratxeta,Miguel A. Andrade‐Navarro	3
13	CELDA - an ontology for the comprehensive representation of cells in complex systems 2013 ·BMC Bioinformatics ·Stefanie Seltmann,Harald Stachelscheid,(unknown),Ludger Jansen,Fritz Lekschas,Jean−Fred Fontaine,(unknown),Ulf Leser,Armin Kurtz	12
14	CellFinder: a cell data repository 2013 ·Nucleic Acids Research ·Harald Stachelscheid,Stefanie Seltmann,Fritz Lekschas,Jean−Fred Fontaine,Nancy Mah,Mariana Neves,Miguel A. Andrade‐Navarro,Ulf Leser,Armin Kurtz	22
15	Using cited references to improve the retrieval of related biomedical documents 2013 ·BMC Bioinformatics ·Francisco Ortuño,Ignacio Rojas,Miguel A. Andrade‐Navarro,Jean−Fred Fontaine	15
16	Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions 2013 ·PLoS Computational Biology ·Martin H. Schaefer,Tiago J. S. Lopes,Nancy Mah,Jason E. Shoemaker,Yukiko Matsuoka,Jean−Fred Fontaine,Caroline Louis‐Jeune,Amie J. Eisfeld,Gabriele Neumann,Carol Perez‐Iratxeta,Yoshihiro Kawaoka,Hiroaki Kitano,Miguel A. Andrade‐Navarro	59
17	Aversion to Nicotine Is Regulated by the Balanced Activity of β4 and α5 Nicotinic Receptor Subunits in the Medial Habenula 2011 ·Neuron ·Silke Frahm,(unknown),Leiron Ferrarese,Julio Santos‐Torres,Beatriz Antolin‐Fontes,(unknown),Sergey Filkin,Stéphanie Pons,Jean−Fred Fontaine,Victor I. Tsetlin,Uwe Maskos,Inés Ibáñez-Tallon	230
18	QiSampler: evaluation of scoring schemes for high-throughput datasets using a repetitive sampling strategy on gold standards 2011 ·BMC Research Notes ·Jean−Fred Fontaine,Bernhard Suter,Miguel A. Andrade‐Navarro	3
19	LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships 2010 ·BMC Bioinformatics ·Adriano Barbosa-Silva,Theodoros Soldatos,Ivan L. F. Magalhães,Georgios A. Pavlopoulos,Jean−Fred Fontaine,Miguel A. Andrade‐Navarro,Reinhard Schneider,José Miguel Ortega	20
20	MedlineRanker: flexible ranking of biomedical literature 2009 ·Nucleic Acids Research ·Jean−Fred Fontaine,Adriano Barbosa-Silva,Martin H. Schaefer,Matthew R. Huska,Enrique M. Muro,Miguel A. Andrade‐Navarro	107

About Jean−Fred Fontaine

Jean−Fred Fontaine is a scholar working on Immunology and Allergy, Dermatology and Molecular Biology, having authored 63 papers that have together received 1.6k indexed citations. Recurring topics across this work include Bioinformatics and Genomic Networks (16 papers), Allergic Rhinitis and Sensitization (13 papers) and Food Allergy and Anaphylaxis Research (12 papers). The work is most often cited by research in Molecular Biology (1.1k citations), Cancer Research (168 citations) and Computational Theory and Mathematics (154 citations). Jean−Fred Fontaine has collaborated with scholars based in Germany, France and United States. Frequent co-authors include Miguel A. Andrade‐Navarro, Martin H. Schaefer, Erich E. Wanker, Adriano Barbosa-Silva, Pablo Porras, Arunachalam Vinayagam, Enrique M. Muro, Yves Malthièry, Julio Santos‐Torres and Silke Frahm. Their work appears in journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Journal of Clinical Investigation.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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