James A. Eddy

11.1k total citations
24 papers, 1.8k citations indexed

About

James A. Eddy is a scholar working on Molecular Biology, Pulmonary and Respiratory Medicine and Genetics. According to data from OpenAlex, James A. Eddy has authored 24 papers receiving a total of 1.8k indexed citations (citations by other indexed papers that have themselves been cited), including 13 papers in Molecular Biology, 3 papers in Pulmonary and Respiratory Medicine and 3 papers in Genetics. Recurrent topics in James A. Eddy's work include Bioinformatics and Genomic Networks (7 papers), Microbial Metabolic Engineering and Bioproduction (7 papers) and Gene Regulatory Network Analysis (4 papers). James A. Eddy is often cited by papers focused on Bioinformatics and Genomic Networks (7 papers), Microbial Metabolic Engineering and Bioproduction (7 papers) and Gene Regulatory Network Analysis (4 papers). James A. Eddy collaborates with scholars based in United States, China and Italy. James A. Eddy's co-authors include Nathan D. Price, Jason A. Papin, Yuliang Wang, Jong Min Lee, Erwin P. Gianchandani, Donald Geman, Lucas B. Edelman, Seth A. Ament, Leroy Hood and Arvind K. Chavali and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Neuron and Bioinformatics.

In The Last Decade

James A. Eddy

23 papers receiving 1.8k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
James A. Eddy United States 17 948 325 232 221 218 24 1.8k
Ida Biunno Italy 26 1.1k 1.2× 262 0.8× 349 1.5× 202 0.9× 260 1.2× 115 2.4k
Daniel Ho United States 17 1.5k 1.6× 313 1.0× 278 1.2× 159 0.7× 141 0.6× 18 2.3k
Anthony Anselmo United States 21 964 1.0× 169 0.5× 181 0.8× 199 0.9× 227 1.0× 26 1.6k
Xusheng Wang United States 24 1.3k 1.3× 193 0.6× 288 1.2× 102 0.5× 219 1.0× 68 1.9k
Ying‐Wooi Wan United States 23 982 1.0× 358 1.1× 281 1.2× 306 1.4× 204 0.9× 51 1.8k
Shuang Liu China 28 1.3k 1.4× 318 1.0× 101 0.4× 136 0.6× 154 0.7× 99 2.4k
Charles A. Glass United States 22 1.6k 1.7× 172 0.5× 243 1.0× 91 0.4× 142 0.7× 40 2.5k
Guizhi Sun Australia 19 1.1k 1.1× 73 0.2× 343 1.5× 379 1.7× 303 1.4× 50 1.8k
Christina A. Harrington United States 28 1.4k 1.5× 346 1.1× 318 1.4× 268 1.2× 343 1.6× 65 2.7k
Yusuke Takeuchi Japan 24 759 0.8× 113 0.3× 127 0.5× 92 0.4× 454 2.1× 62 1.8k

Countries citing papers authored by James A. Eddy

Since Specialization
Citations

This map shows the geographic impact of James A. Eddy's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by James A. Eddy with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites James A. Eddy more than expected).

Fields of papers citing papers by James A. Eddy

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by James A. Eddy. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by James A. Eddy. The network helps show where James A. Eddy may publish in the future.

Co-authorship network of co-authors of James A. Eddy

This figure shows the co-authorship network connecting the top 25 collaborators of James A. Eddy. A scholar is included among the top collaborators of James A. Eddy based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with James A. Eddy. James A. Eddy is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
DeFelice, Mialy, Caroline Morin, Julie Bletz, et al.. (2022). Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database. Database. 2022.
2.
Cerosaletti, Karen, Junbao Yang, Hannah A. DeBerg, et al.. (2017). Single-Cell RNA Sequencing Reveals Expanded Clones of Islet Antigen-Reactive CD4+ T Cells in Peripheral Blood of Subjects with Type 1 Diabetes. The Journal of Immunology. 199(1). 323–335. 65 indexed citations
3.
Samal, Areejit, James Craig, Samuel T. Coradetti, et al.. (2017). Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa. Biotechnology for Biofuels. 10(1). 225–225. 27 indexed citations
4.
Eddy, James A., Cory C. Funk, & Nathan D. Price. (2015). Fostering synergy between cell biology and systems biology. Trends in Cell Biology. 25(8). 440–445. 3 indexed citations
5.
Chakrabarty, Paramita, Andrew Li, Carolina Ceballos‐Diaz, et al.. (2015). IL-10 Alters Immunoproteostasis in APP Mice, Increasing Plaque Burden and Worsening Cognitive Behavior. Neuron. 85(3). 519–533. 283 indexed citations
6.
Earls, John C., James A. Eddy, Cory C. Funk, et al.. (2013). AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures. BMC Bioinformatics. 14(1). 78–78. 4 indexed citations
7.
Wang, Chunjing, Cory C. Funk, James A. Eddy, & Nathan D. Price. (2013). Transcriptional Analysis of Aggressiveness and Heterogeneity across Grades of Astrocytomas. PLoS ONE. 8(10). e76694–e76694. 7 indexed citations
8.
Sangar, Vineet, James A. Eddy, Evangelos Simeonidis, & Nathan D. Price. (2012). Mechanistic modeling of aberrant energy metabolism in human disease. Frontiers in Physiology. 3. 404–404. 18 indexed citations
9.
Wang, Yuliang, James A. Eddy, & Nathan D. Price. (2012). Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE. BMC Systems Biology. 6(1). 153–153. 218 indexed citations
10.
Cogdell, David, et al.. (2012). [Expression of PRUNE2 mRNA and its positive correlation with non-coding RNA PCA3 in leiomyosarcoma].. PubMed. 34(7). 497–500. 2 indexed citations
11.
Eddy, James A., Ravali Raju, Pan‐Jun Kim, et al.. (2011). Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. BMC Systems Biology. 5(1). 130–130. 81 indexed citations
12.
Chandrasekaran, Sriram, Seth A. Ament, James A. Eddy, et al.. (2011). Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states. Proceedings of the National Academy of Sciences. 108(44). 18020–18025. 131 indexed citations
13.
Magis, Andrew T., John C. Earls, Younhee Ko, James A. Eddy, & Nathan D. Price. (2011). Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup. Bioinformatics. 27(6). 872–873. 8 indexed citations
14.
Yang, Jilong, James A. Eddy, Yuan Pan, et al.. (2010). Integrated Proteomics and Genomics Analysis Reveals a Novel Mesenchymal to Epithelial Reverting Transition in Leiomyosarcoma through Regulation of Slug. Molecular & Cellular Proteomics. 9(11). 2405–2413. 49 indexed citations
15.
Eddy, James A., Leroy Hood, Nathan D. Price, & Donald Geman. (2010). Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC). PLoS Computational Biology. 6(5). e1000792–e1000792. 70 indexed citations
16.
Edelman, Lucas B., James A. Eddy, & Nathan D. Price. (2009). In silico models of cancer. WIREs Systems Biology and Medicine. 2(4). 438–459. 92 indexed citations
17.
Eddy, James A., Donald Geman, & Nathan D. Price. (2009). Relative expression analysis for identifying perturbed pathways. PubMed. 2009. 5456–5459. 5 indexed citations
18.
Chavali, Arvind K., et al.. (2008). Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major. Molecular Systems Biology. 4(1). 177–177. 108 indexed citations
19.
Lee, Jong Min, Erwin P. Gianchandani, James A. Eddy, & Jason A. Papin. (2008). Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks. PLoS Computational Biology. 4(5). e1000086–e1000086. 174 indexed citations
20.
Lee, Jong Min, Erwin P. Gianchandani, James A. Eddy, & Jason A. Papin. (2008). Correction: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks. PLoS Computational Biology. 4(6). 78 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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