Ira Cooke

3.5k citations

77 papers · 2.1k indexed · h-index 24

Impact in

Ecology top 2%
- Coral and Marine Ecosystems Studies
Oceanography top 5%
- Marine and coastal plant biology

Papers in

Ecology 33
- Coral and Marine Ecosystems Studies 20
Biotechnology 8
- Marine Sponges and Natural Products 8

Co-authors: Markus Deserno Kurt Kremer Jan M. Strugnell David J. Miller Nathan E. Hall Sylvain Forêt Nicholas A. Robinson D. R. M. Williams
Journals: Journal of Proteome Research (5 papers)Aquaculture (3 papers)Molecular Ecology (3 papers)Molecular Phylogenetics and Evolution (2 papers)Frontiers in Ecology and Evolution (2 papers)
Partner nations: Australia United Kingdom Germany

In The Last Decade

Ira Cooke

73 papers receiving 2.1k citations

Peers

Countries citing papers authored by Ira Cooke

Since Specialization

Citations

This map shows the geographic impact of Ira Cooke's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ira Cooke with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ira Cooke more than expected).

Fields of papers citing papers by Ira Cooke

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ira Cooke. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ira Cooke. The network helps show where Ira Cooke may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Ira Cooke, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ira Cooke Line = papers co-authored together Ira Cooke links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Rapid Evolution in Action: Environmental Filtering Supports Coral Adaptation to a Hot, Acidic, and Deoxygenated Extreme Habitat Global Change Biology ·Cosmin Tămaş, Gergely Torda, Chengran Zhou, Ju-Won 석주원 Suck, Jessica Harris, Xueyan Xiang, Shangjin Tan, Wei Tian, Benjamin C. C. Hume, David J. Miller, Qiye Li, Guojie Zhang, Ira Cooke, Riccardo Rodolfo‐Metalpa	2025	0
2	Assessing the potential for “assisted gene flow” to enhance heat tolerance of multiple coral genera over three key phenotypic traits Biological Conservation ·Shoulei Miao, Issam Serghini, Jessica Cheok, Katarina Damjanovic, Lauren Muñoz-Tremblay, Freddy F. Revilla, Patrick W. Laffy, Ira Cooke, Jan M. Strugnell, Kate M. Quigley	2025	0
3	Circumpolar and Regional Seascape Drivers of Genomic Variation in a Southern Ocean Octopus Molecular Ecology ·健黄, Nerida G. Wilson, Phillip C. Watts, Catarina N. S. Silva, Ira Cooke, A. Louise Allcock, Felix Christopher Mark, Katrin Linse, Olga P. Korsakova, Jan M. Strugnell	2024	0
4	Chromosome-scale genome assembly of the tropical abalone (Haliotis asinina) Scientific Data ·Siena Saunders, Ira Cooke, Sue‐Ann Watson, 健黄, Jan M. Strugnell	2024	2
5	Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti , on the Great Barrier Reef Molecular Ecology ·Jia Zhang, Jorge A. Gonzáles Gonzáles, Matthew A. Field, Cheong Xin Chan, David J. Miller, Jan M. Strugnell, Cynthia Riginos, Line K. Bay, Ira Cooke	2024	3
6	Harnessing genomic technologies for one health solutions in the tropics Globalization and Health ·Andrew Calcino, Ira Cooke, Б.Б. Утешов, Megan Higgie, Cécile Massault, Ulf Schmitz, Maxine Whittaker, Matthew A. Field	2024	3
7	Genomic evidence for West Antarctic Ice Sheet collapse during the Last Interglacial Science ·健黄, Nerida G. Wilson, Nicholas R. Golledge, T. Naish, Phillip C. Watts, Catarina N. S. Silva, Ira Cooke, A. Louise Allcock, Felix Christopher Mark, Katrin Linse, Jan M. Strugnell	2023	24
8	SNP data reveals the complex and diverse evolutionary history of the blue-ringed octopus genus (Octopodidae: Hapalochlaena) in the Asia-Pacific Molecular Phylogenetics and Evolution ·Glenda G. Moleski, Julian Finn, Kyall R. Zenger, Ira Cooke, J. D. KICH, Jan M. Strugnell	2023	2
9	Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data Briefings in Bioinformatics ·Patrick Anthony Bailey, Przemysław Gagat, Irina Alebastrova, Sl awomir Solecki, E. F. K. Koerner, Sebastian Loew, T. V. Ardasheva, Rafał Kolenda, Stefan Rödiger, Rolf Kreibich, Ira Cooke, Paweł Mackiewicz, Michał Burdukiewicz	2022	49
10	Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum Molecular Biology and Evolution ·Jia Zhang, Zoe T. Richards, Arne A. S. Adam, Cheong Xin Chan, Chuya Shinzato, James Gilmour, Luke Thomas, Jan M. Strugnell, David J. Miller, Ira Cooke	2022	18
11	Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss GigaScience ·Glenda G. Moleski, Ira Cooke, Julian Finn, Rute R. da Fonseca, Juan Shu, M. Thomas P. Gilbert, Oleg Simakov, Jan M. Strugnell	2020	15
12	Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts Science Advances ·Ira Cooke, Hua Ying, Sylvain Forêt, Pim Bongaerts, Jan M. Strugnell, Oleg Simakov, Jia Zhang, Matthew A. Field, Mauricio Rodríguez‐Lanetty, Sara C. Bell, David G. Bourne, Madeleine J. H. van Oppen, Mark A. Ragan, David J. Miller	2020	54
13	ampir: an R package for fast genome-wide prediction of antimicrobial peptides Bioinformatics ·Rolf Kreibich, David J. Miller, Jan M. Strugnell, Norelle L. Daly, Ira Cooke	2020	47
14	The evolution and origin of tetrodotoxin acquisition in the blue-ringed octopus (genus Hapalochlaena) Aquatic Toxicology ·Glenda G. Moleski, Ira Cooke, Julian Finn, Kyall R. Zenger, Jan M. Strugnell	2018	23
15	Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis Communications Biology ·Huanle Liu, Timothy G. Stephens, Raúl A. González‐Pech, Victor H. Beltran, Bruno Lapeyre, Pim Bongaerts, Ira Cooke, Manuel Aranda, David G. Bourne, Sylvain Forêt, David J. Miller, Madeleine J. H. van Oppen, Christian R. Voolstra, Mark A. Ragan, Cheong Xin Chan	2018	144
16	Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature BMC Genomics ·Waldo G. Nuez‐Ortín, CG Carter, Peter D. Nichols, Ira Cooke, Richard Wilson	2018	52
17	An Accessible Proteogenomics Informatics Resource for Cancer Researchers Cancer Research ·Matthew Chambers, Pratik Jagtap, James E. Johnson, Thomas McGowan, Praveen Kumar, Getiria Onsongo, Candace Guerrero, Harald Barsnes, Marc Vaudel, Lennart Martens, Björn Grüning, Ira Cooke, Mohammad Heydarian, Karen L. Reddy, Timothy J. Griffin	2017	23
18	De Novo Characterisation of the Greenlip Abalone Transcriptome (Haliotis laevigata) with a Focus on the Heat Shock Protein 70 (HSP70) Family Marine Biotechnology ·Pedro Martin-Buro Martín, Nathan E. Hall, Ira Cooke, Nicholas A. Robinson, Jan M. Strugnell	2014	45
19	Characterization of a Distinct Population of Circulating Human Non-Adherent Endothelial Forming Cells and Their Recruitment via Intercellular Adhesion Molecule-3 PLoS ONE ·Sarah Appleby, 健三友永, Jyotsna B. Pippal, Emma J. Thompson, Gerónimo Giménez, Katie L. Tooley, Shaundeep Sen, Wai Yan Sun, Randall Grose, I. Nicholson, A.L. van Dijk, Ira Cooke, Gert Talbo, Angel F. López, Claudine S. Bonder	2012	20
20	Coupling between Lipid Shape and Membrane Curvature Biophysical Journal ·Ira Cooke, Markus Deserno	2006	164

About Ira Cooke

Ira Cooke is a scholar working on Ecology, Biotechnology, Global and Planetary Change, Aquatic Science and Ecology, Evolution, Behavior and Systematics, having authored 77 papers that have together received 2.1k indexed citations. Recurring topics across this work include Coral and Marine Ecosystems Studies (20 papers), Cephalopods and Marine Biology (12 papers), Marine Bivalve and Aquaculture Studies (11 papers), Genomics and Phylogenetic Studies (10 papers), Aquaculture disease management and microbiota (8 papers), Marine Sponges and Natural Products (8 papers), Aquaculture Nutrition and Growth (6 papers) and Ichthyology and Marine Biology (5 papers). The work is most often cited by research in Ecology (667 citations), Oceanography (238 citations), Microbiology (115 citations), Aquatic Science (119 citations) and Molecular Biology (1.0k citations). Ira Cooke has collaborated with scholars based in Australia, United Kingdom and Germany. Frequent co-authors include Markus Deserno, Kurt Kremer, Jan M. Strugnell, David J. Miller, Nathan E. Hall, Sylvain Forêt, Nicholas A. Robinson, D. R. M. Williams, A. Louise Allcock and David G. Bourne. Their work appears in journals such as Journal of Proteome Research, Aquaculture, Molecular Ecology, Molecular Phylogenetics and Evolution and Frontiers in Ecology and Evolution.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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