Hongxu Ding

1.4k total citations · 1 hit paper
26 papers, 807 citations indexed

About

Hongxu Ding is a scholar working on Molecular Biology, Surgery and Pulmonary and Respiratory Medicine. According to data from OpenAlex, Hongxu Ding has authored 26 papers receiving a total of 807 indexed citations (citations by other indexed papers that have themselves been cited), including 18 papers in Molecular Biology, 5 papers in Surgery and 3 papers in Pulmonary and Respiratory Medicine. Recurrent topics in Hongxu Ding's work include RNA modifications and cancer (6 papers), Single-cell and spatial transcriptomics (5 papers) and Gene Regulatory Network Analysis (5 papers). Hongxu Ding is often cited by papers focused on RNA modifications and cancer (6 papers), Single-cell and spatial transcriptomics (5 papers) and Gene Regulatory Network Analysis (5 papers). Hongxu Ding collaborates with scholars based in United States, China and Norway. Hongxu Ding's co-authors include Kaitai Zhang, Wei Sun, Yu Zhao, Rui Yao, Liliang Ouyang, Ting Zhang, Joshua M. Stuart, Ioannis N. Anastopoulos, Lucas Seninge and Andrea Califano and has published in prestigious journals such as Journal of Clinical Investigation, Nature Communications and Bioinformatics.

In The Last Decade

Hongxu Ding

26 papers receiving 796 citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Three-dimensional printing of Hela cells for cervical tumor model in vitro

2014 433 citations Hongxu Ding et al. profile →

Peers

Countries citing papers authored by Hongxu Ding

Since Specialization

Citations

This map shows the geographic impact of Hongxu Ding's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Hongxu Ding with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Hongxu Ding more than expected).

Fields of papers citing papers by Hongxu Ding

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Hongxu Ding. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Hongxu Ding. The network helps show where Hongxu Ding may publish in the future.

Co-authorship network of co-authors of Hongxu Ding

This figure shows the co-authorship network connecting the top 25 collaborators of Hongxu Ding. A scholar is included among the top collaborators of Hongxu Ding based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Hongxu Ding. Hongxu Ding is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	A spatiotemporal and machine-learning platform facilitates the manufacturing of hPSC-derived esophageal mucosa 2025 ·Developmental Cell ·Ying Yang, (unknown), Lucas Seninge, Lihao Guo, (unknown), Yongchun Zhang, (unknown), Sadhana Gaddam, (unknown), Hanson H. Zhen, (unknown), Ian A. Glass, Gregory W. Charville, Jianwen Que, Joshua M. Stuart, Hongxu Ding, Anthony E. Oro	2
2	Histopathologic and genetic distinction of well-differentiated grade 3 neuroendocrine tumor versus poorly-differentiated neuroendocrine carcinoma in high-grade neuroendocrine neoplasms 2025 ·American Journal of Clinical Pathology ·Belinda Sun, Hongxu Ding	1
3	Training data diversity enhances the basecalling of novel RNA modification-induced nanopore sequencing readouts 2025 ·Nature Communications ·Ziyuan Wang, (unknown), Yinshan Fang, Hao Helen Zhang, Xiaoxiao Sun, Ning Hao, Jianwen Que, Hongxu Ding	6
4	Adapting nanopore sequencing basecalling models for modification detection via incremental learning and anomaly detection 2024 ·Nature Communications ·Ziyuan Wang, Yinshan Fang, (unknown), Ning Hao, Hao Helen Zhang, Xiaoxiao Sun, Jianwen Que, Hongxu Ding	11
5	The manatee variational autoencoder model for predicting gene expression alterations caused by transcription factor perturbations 2024 ·Scientific Reports ·Ying Yang, Lucas Seninge, Ziyuan Wang, Anthony E. Oro, Joshua M. Stuart, Hongxu Ding	1
6	Single-cell signatures identify microenvironment factors in tumors associated with patient outcomes 2024 ·Cell Reports Methods ·(unknown), Verena Friedl, Hongxu Ding, Christopher K. Wong, Joshua M. Stuart	2
7	Single Cell Analysis of Lung Lymphatic Endothelial Cells and Lymphatic Responses during Influenza Infection 2024 ·PubMed ·Jian Ge, Hongxia Shao, Hongxu Ding, Yuefeng Huang, Xuebing Wu, Jie Sun, Jianwen Que	6
8	Abstract PR01: Identification and pharmacological targeting of treatment-resistant, stem-like breast cancer cells for combination therapy 2024 ·Cancer Research ·Jeremy Worley, (unknown), Daoqi You, Mikko Turunen, Hongxu Ding, Evan Paull, Aaron T. Griffin, Adina Grunn, (unknown), Erin Bush, (unknown), Prabhjot S. Mundi, Peter A. Sims, Piero Dalerba, Filemon S. Dela Cruz, Andrew L. Kung, Andrea Califano	1
9	β-cell Jagged1 is sufficient but not necessary for islet Notch activity and insulin secretory defects in obese mice 2024 ·Molecular Metabolism ·Nina Suda, Alberto Bartolomé, (unknown), Jinsook Son, Yoko Yagishita, Christian W. Siebel, Domenico Accili, Hongxu Ding, Utpal B. Pajvani	1
10	E2F1 Mediates SOX17 Deficiency–Induced Pulmonary Hypertension 2023 ·Hypertension ·Dan Yi, Bin Liu, Hongxu Ding, Shuai Li, Rebecca Li, (unknown), Karina Ramírez, Xiaomei Xia, Mrinalini Kala, (unknown), Won Hee Lee, Richard E. Frye, Ting Wang, Yutong Zhao, Kenneth S. Knox, Christopher C. Glembotski, Michael B. Fallon, Zhiyu Dai	9
11	Genetic and pharmacologic inhibition of ALDH1A3 as a treatment of β-cell failure 2023 ·Nature Communications ·Jinsook Son, Wen Du, Mark Esposito, Kaavian Shariati, Hongxu Ding, Yibin Kang, Domenico Accili	26
12	Notch-mediated Ephrin signaling disrupts islet architecture and β cell function 2022 ·JCI Insight ·Alberto Bartolomé, Nina Suda, Junjie Yu, Changyu Zhu, Jinsook Son, Hongxu Ding, Andrea Califano, Domenico Accili, Utpal B. Pajvani	8
13	Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling 2022 ·eLife ·Andrew D. Bailey, Jason Talkish, Hongxu Ding, Haller Igel, Alejandra Durán, (unknown), Benedict Paten, Manuel Ares	31
14	VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics 2021 ·Nature Communications ·Lucas Seninge, Ioannis N. Anastopoulos, Hongxu Ding, Joshua M. Stuart	58
15	Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures 2021 ·Nature Communications ·Hongxu Ding, Ioannis N. Anastopoulos, Andrew D. Bailey, Joshua M. Stuart, Benedict Paten	8
16	BACH2 inhibition reverses β cell failure in type 2 diabetes models 2021 ·Journal of Clinical Investigation ·Jinsook Son, Hongxu Ding, Thomas B. Farb, Alexander M. Efanov, Jiajun Sun, (unknown), Samreen K. Syed, (unknown), Qidi Wang, Domenico Accili, Andrea Califano	36
17	Transcriptome analysis of differentially expressed genes in chrysanthemum MET1 RNA interference lines 2021 ·Physiology and Molecular Biology of Plants ·(unknown), Yi Zhu, (unknown), Penghui Ai, Muhammad Ayoub Khan, Hongxu Ding, (unknown), Zicheng Wang	5
18	Prioritizing transcriptional factors in gene regulatory networks with PageRank 2020 ·iScience ·Hongxu Ding, Ying Yang, (unknown), Lucas Seninge, Henry Gong, (unknown), Andrea Califano, Joshua M. Stuart	9
19	Biological process activity transformation of single cell gene expression for cross-species alignment 2019 ·Nature Communications ·Hongxu Ding, Andrew P. Blair, Ying Yang, Joshua M. Stuart	23
20	Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm 2018 ·Nature Communications ·Hongxu Ding, Eugene F. Douglass, Adam M. Sonabend, Angeliki Mela, Sayantan Bose, Christian Chapa González, Peter Canoll, Peter A. Sims, Mariano J. Alvarez, Andrea Califano	53

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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