David Vallenet

12.1k citations

62 papers · 4.8k indexed · 1 hit paper · h-index 34

Impact in

Molecular Medicine top 0.2%
- Antibiotic Resistance in Bacteria
Endocrinology top 0.5%

Papers in

Microbiology 2
Molecular Medicine 5
- Antibiotic Resistance in Bacteria 5

Co-authors: Claudine Médigue Valérie Barbe Stéphane Cruveiller Aurélie Lajus Zoé Rouy Jean Weissenbach David Roche Sophie Mangenot
Journals: Nucleic Acids Research (5 papers)Journal of Bacteriology (5 papers)PLoS ONE (4 papers)Microbiology (2 papers)Nature Communications (2 papers)
Partner nations: France United States United Kingdom

In The Last Decade

David Vallenet

61 papers receiving 4.8k citations

Hit Papers

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Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii 2006 · 645 citations

Peers

Countries citing papers authored by David Vallenet

Since Specialization

Citations

This map shows the geographic impact of David Vallenet's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by David Vallenet with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites David Vallenet more than expected).

Fields of papers citing papers by David Vallenet

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by David Vallenet. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by David Vallenet. The network helps show where David Vallenet may publish in the future.

Co-authors

The 25 scholars most cited alongside David Vallenet, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with David Vallenet Line = papers co-authored together David Vallenet links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	A refined picture of the native amine dehydrogenase family revealed by extensive biodiversity screening Nature Communications ·Eddy Elisée, Laurine Ducrot, Raphaël Méheust, Karine Bastard, Aurélie Fossey‐Jouenne, Gideon Grogan, Éric Pelletier, Jean‐Louis Petit, Mark Stam, Véronique de Berardinis, Anne Zaparucha, David Vallenet, Carine Vergne‐Vaxelaire	2024	7
2	A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century Microbial Biotechnology ·Erhard Bremer, Alexandra Calteau, Antoine Danchin, Colin R. Harwood, John D. Helmann, Claudine Médigue, Bernhard Ø. Palsson, Agnieszka Sekowska, David Vallenet, Abril Zuniga, Cristal Zúñiga	2023	18
3	A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins PLoS ONE ·Rania Jabeur, Virginie Guyon, Szabolcs Tóth, Adriano E Pereira, Man P. Huynh, Zakia Selmani, Erin Boland, Mickaël Bosio, Laurent Beuf, Pete L. Clark, David Vallenet, Wafa Achouak, Carine Audiffrin, François Torney, Wyatt Paul, Thierry Heulin, Bruce E. Hibbard, Stefan Toepfer, Christophe Sallaud	2023	8
4	panRGP: a pangenome-based method to predict genomic islands and explore their diversity Bioinformatics ·Adelme Bazin, Guillaume Gautreau, Claudine Médigue, David Vallenet, Alexandra Calteau	2020	25
5	PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph PLoS Computational Biology ·Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, Mathieu Dubois, Amandine Perrin, Claudine Médigue, Alexandra Calteau, Stéphane Cruveiller, Catherine Matias, Christophe Ambroise, Eduardo P. C. Rocha, David Vallenet	2020	121
6	Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen Nature Communications ·Alastair Muir, Ishwori Gurung, Ana Cehovin, Adelme Bazin, David Vallenet, Vladimir Pelicic	2020	9
7	Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist Nature Microbiology ·Caroline Monteil, David Vallenet, Nicolas Menguy, Karim Benzerara, Valérie Barbe, Stéphanie Fouteau, Corinne Cruaud, Magali Floriani, Éric Viollier, Géraldine Adryanczyk, Nathalie Leonhardt, Damien Faivre, David Pignol, Purificación López‐García, Richard J. Weld, Christopher T. Lefèvre	2019	50
8	MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis Nucleic Acids Research ·David Vallenet, Alexandra Calteau, Mathieu Dubois, Paul Amours, Adelme Bazin, Mylène Beuvin, Laura Burlot, Xavier Bussell, Stéphanie Fouteau, Guillaume Gautreau, Aurélie Lajus, Jordan Langlois, Rémi Planel, David Roche, Johan Rollin, Zoé Rouy, Valentin Sabatet, Claudine Médigue	2019	216
9	PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level Microbial Genomics ·Guilhem Royer, Jean‐Winoc Decousser, Catherine Branger, Mathieu Dubois, Claudine Médigue, Érick Denamur, David Vallenet	2018	29
10	MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes Nucleic Acids Research ·David Vallenet, Alexandra Calteau, Stéphane Cruveiller, Mathieu Gachet, Aurélie Lajus, Adrien Josso, Jonathan Mercier, Alexandre Renaux, Johan Rollin, Zoé Rouy, David Roche, Claude Scarpelli, Claudine Médigue	2016	145
11	Profiling the orphan enzymes Biology Direct ·Maria Sorokina, Mark Stam, Claudine Médigue, Olivier Lespinet, David Vallenet	2014	33
12	Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC BMC Genomics ·Stéfan Engelen, David Vallenet, Claudine Médigue, Antoine Danchin	2012	17
13	The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes PLoS Computational Biology ·Alexander Smith, Eugeni Belda, Alain Viari, Claudine Médigue, David Vallenet	2012	27
14	MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data Nucleic Acids Research ·David Vallenet, Eugeni Belda, Alexandra Calteau, Stéphane Cruveiller, Stéfan Engelen, Aurélie Lajus, François Le Fèvre, Cyrille Longin, Damien Mornico, David Roche, Zoé Rouy, Grégory Salvignol, Claude Scarpelli, Alexander Smith, Marion Weiman, Claudine Médigue	2012	314
15	Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles PLoS ONE ·Benoît Remenant, Jean-Charles de Cambiaire, Gilles Cellier, Jonathan M. Jacobs, Sophie Mangenot, Valérie Barbe, Aurélie Lajus, David Vallenet, Claudine Médigue, Mark Fegan, Caitilyn Allen, Philippe Prior	2011	103
16	TheFrankia alniSymbiotic Transcriptome Molecular Plant-Microbe Interactions ·Nicole Alloisio, Clothilde Queiroux, Pascale Fournier, Petar Pujić, Philippe Normand, David Vallenet, Claudine Médigue, Masatoshi Yamaura, Kentaro Kakoi, Ken‐ichi Kucho	2010	75
17	Genome Sequences of Escherichia coli B strains REL606 and BL21(DE3) Journal of Molecular Biology ·Haeyoung Jeong, Valérie Barbe, Choong Hoon Lee, David Vallenet, Dong Yu, Sang-Haeng Choi, Arnaud Couloux, Seungwon Lee, Sung Ho Yoon, Laurence Cattolico, Cheol-Goo Hur, Hong-Seog Park, Béatrice Segurens, Sun Chang Kim, Tae Kwang Oh, Richard E. Lenski, F. William Studier, Patrick Daegelen, Jihyun F. Kim	2009	276
18	Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles PLoS ONE ·David Vallenet, Patrice Nordmann, Valérie Barbe, Laurent Poirel, Sophie Mangenot, Elodie Bataille, Carole Dossat, Shahinaz Gas, Annett Kreimeyer, Patricia Lenoble, Sophie Oztas, Julie Poulain, Béatrice Segurens, Catherine Robert, Chantal Abergel, Jean‐Michel Claverie, Didier Raoult, Claudine Médigue, Jean Weissenbach, Stéphane Cruveiller	2008	255
19	Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila Nature Biotechnology ·Nicolas Vodovar, David Vallenet, Stéphane Cruveiller, Zoé Rouy, Valérie Barbe, Carlos Horacio Acosta‐Muñiz, Laurence Cattolico, Claire Jubin, Aurélie Lajus, Béatrice Segurens, Benoît Vacherie, Patrick Wincker, Jean Weissenbach, Bruno Lemaître, Claudine Médigue, Frédéric Boccard	2006	193
20	MaGe: a microbial genome annotation system supported by synteny results Nucleic Acids Research ·David Vallenet	2006	297

About David Vallenet

David Vallenet is a scholar working on Microbiology, Molecular Medicine, Endocrinology, Biochemistry and Molecular Biology, having authored 62 papers that have together received 4.8k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (27 papers), Microbial Metabolic Engineering and Bioproduction (15 papers), Bacterial Genetics and Biotechnology (14 papers), Microbial Community Ecology and Physiology (9 papers), Legume Nitrogen Fixing Symbiosis (8 papers), Bioinformatics and Genomic Networks (7 papers), RNA and protein synthesis mechanisms (6 papers) and Antibiotic Resistance in Bacteria (5 papers). The work is most often cited by research in Molecular Medicine (1.0k citations), Endocrinology (686 citations), Microbiology (43 citations), Molecular Biology (2.8k citations) and Ecology (996 citations). David Vallenet has collaborated with scholars based in France, United States and United Kingdom. Frequent co-authors include Claudine Médigue, Valérie Barbe, Stéphane Cruveiller, Aurélie Lajus, Zoé Rouy, Jean Weissenbach, David Roche, Sophie Mangenot, Alexandra Calteau and Antoine Danchin. Their work appears in journals such as Nucleic Acids Research, Journal of Bacteriology, PLoS ONE, Microbiology and Nature Communications.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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