David S. Holmes

13.7k total citations · 1 hit paper
266 papers, 11.2k citations indexed

About

David S. Holmes is a scholar working on Biomedical Engineering, Materials Chemistry and Molecular Biology. According to data from OpenAlex, David S. Holmes has authored 266 papers receiving a total of 11.2k indexed citations (citations by other indexed papers that have themselves been cited), including 101 papers in Biomedical Engineering, 70 papers in Materials Chemistry and 52 papers in Molecular Biology. Recurrent topics in David S. Holmes's work include Metal Extraction and Bioleaching (96 papers), Corrosion Behavior and Inhibition (65 papers) and Minerals Flotation and Separation Techniques (32 papers). David S. Holmes is often cited by papers focused on Metal Extraction and Bioleaching (96 papers), Corrosion Behavior and Inhibition (65 papers) and Minerals Flotation and Separation Techniques (32 papers). David S. Holmes collaborates with scholars based in Chile, United States and Sweden. David S. Holmes's co-authors include Michael E. Quigley, Raquel Quatrini, Eugenia Jedlicki, James Bonner, Jorge Valdés, Violaine Bonnefoy, Mark Dopson, Sheldon Solomon, Juan Pablo Cárdenas and Inti Pedroso and has published in prestigious journals such as Science, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

David S. Holmes

262 papers receiving 10.2k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

A rapid boiling method for the preparation of bacterial plasmids

1981 3.1k citations David S. Holmes et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
David S. Holmes Chile	52	3.6k	3.3k	1.6k	1.4k	1.2k	266	11.2k
Frederick S. vom Saal United States	69	1.8k 0.5×	518 0.2×	413 0.3×	274 0.2×	2.6k 2.2×	166	23.2k
Zuhong Lu China	51	5.2k 1.5×	1.5k 0.5×	1.4k 0.9×	74 0.1×	471 0.4×	513	11.8k
R. John Aitken Australia	119	7.0k 2.0×	1.7k 0.5×	3.2k 2.1×	226 0.2×	4.8k 3.9×	679	49.3k
Ellen K. Silbergeld United States	70	2.3k 0.6×	341 0.1×	417 0.3×	509 0.4×	448 0.4×	310	16.5k
Jonathan A. Eisen United States	80	9.6k 2.7×	779 0.2×	434 0.3×	210 0.2×	2.0k 1.7×	324	24.4k
Ana M. Soto United States	73	4.2k 1.2×	952 0.3×	285 0.2×	452 0.3×	4.6k 3.8×	197	28.1k
Shanna H. Swan United States	72	2.3k 0.7×	448 0.1×	300 0.2×	227 0.2×	955 0.8×	254	21.8k
Charles R. Tyler United Kingdom	93	2.5k 0.7×	1.3k 0.4×	3.6k 2.3×	1.1k 0.8×	5.2k 4.3×	387	32.4k
J. Thomas Beatty Canada	58	5.3k 1.5×	382 0.1×	475 0.3×	64 0.0×	962 0.8×	229	13.4k
Edward L. Schneider United States	51	7.1k 2.0×	388 0.1×	650 0.4×	146 0.1×	922 0.8×	234	20.0k

Countries citing papers authored by David S. Holmes

Since Specialization

Citations

This map shows the geographic impact of David S. Holmes's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by David S. Holmes with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites David S. Holmes more than expected).

Fields of papers citing papers by David S. Holmes

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by David S. Holmes. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by David S. Holmes. The network helps show where David S. Holmes may publish in the future.

Co-authorship network of co-authors of David S. Holmes

This figure shows the co-authorship network connecting the top 25 collaborators of David S. Holmes. A scholar is included among the top collaborators of David S. Holmes based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with David S. Holmes. David S. Holmes is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

González, Carolina, et al.. (2025). Comparative Genomics of Sigma Factors in Acidithiobacillia Sheds Light into the Transcriptional Regulatory Networks Involved in Biogeochemical Dynamics in Extreme Acidic Environments. Microorganisms. 13(6). 1199–1199.

Khaleque, Himel Nahreen, Homayoun Fathollahzadeh, Anna H. Kaksonen, et al.. (2024). Genomic insights into key mechanisms for carbon, nitrogen, and phosphate assimilation by the acidophilic, halotolerant genus Acidihalobacter members. FEMS Microbiology Ecology. 100(12). 1 indexed citations

González, Carolina, et al.. (2023). Comparative genomics sheds light on transcription factor-mediated regulation in the extreme acidophilic Acidithiobacillia representatives. Research in Microbiology. 175(1-2). 104135–104135. 2 indexed citations

Scholte, Larissa, Renato Oliveira, Daniel Morais, et al.. (2022). Draft Genome Sequence of the Novel, Moderately Thermophilic, Iron- and Sulfur-Oxidizing Firmicute Strain Y002, Isolated from an Extremely Acidic Geothermal Environment. Microbiology Resource Announcements. 11(6). e0014922–e0014922. 1 indexed citations

Pakostová, Eva, et al.. (2022). Draft Genome Sequence of Firmicutes Strain S ⁰ AB, a Heterotrophic Iron/Sulfur-Oxidizing Extreme Acidophile. Microbiology Resource Announcements. 11(8). e0027122–e0027122. 3 indexed citations

González, Carolina, et al.. (2022). A Large-Scale Genome-Based Survey of Acidophilic Bacteria Suggests That Genome Streamlining Is an Adaption for Life at Low pH. Frontiers in Microbiology. 13. 803241–803241. 19 indexed citations

Jorquera, Rossana, Carolina González, Philip T. L. C. Clausen, Bent Petersen, & David S. Holmes. (2021). SinEx DB 2.0 update 2020: database for eukaryotic single-exon coding sequences. Database. 2021. 2 indexed citations

Holmes, David S., et al.. (2021). A Large-Scale Multiple Genome Comparison of Acidophilic Archaea (pH ≤ 5.0) Extends Our Understanding of Oxidative Stress Responses in Polyextreme Environments. Antioxidants. 11(1). 59–59. 11 indexed citations

Holmes, David S., et al.. (2020). AciDB 1.0: a database of acidophilic organisms, their genomic information and associated metadata. Bioinformatics. 36(19). 4970–4971. 10 indexed citations

10.

Khaleque, Himel Nahreen, et al.. (2020). Unlocking Survival Mechanisms for Metal and Oxidative Stress in the Extremely Acidophilic, Halotolerant Acidihalobacter Genus. Genes. 11(12). 1392–1392. 10 indexed citations

11.

Khaleque, Himel Nahreen, Carolina González, D. Barrie Johnson, et al.. (2020). Genome-based classification of Acidihalobacter prosperus F5 (=DSM 105917=JCM 32255) as Acidihalobacter yilgarnensis sp. nov.. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 70(12). 6226–6234. 11 indexed citations

12.

Martín, Alberto J. M., et al.. (2016). Graphlet Based Metrics for the Comparison of Gene Regulatory Networks. PLoS ONE. 11(10). e0163497–e0163497. 12 indexed citations

13.

Ossandon, Francisco J., et al.. (2016). SinEx DB: a database for single exon coding sequences in mammalian genomes. Database. 2016. baw095–baw095. 16 indexed citations

14.

Holmes, David S., et al.. (2006). Taking the pulse of Latin American microbiology: the 18th ALAM Congress (Pucón, 23-26 October 2006). International Microbiology. 9(4). 306–308. 2 indexed citations

15.

Jedlicki, Eugenia, et al.. (2005). Identification of a Gene Cluster for the Formation of Extracellular Polysaccharide Precursors in the Chemolithoautotroph Acidithiobacillus ferrooxidans. Applied and Environmental Microbiology. 71(6). 2902–2909. 100 indexed citations

16.

McGuire, Kathleen L. & David S. Holmes. (2005). Role of complementary proteins in autoimmunity: an old idea re-emerges with new twists. Trends in Immunology. 26(7). 367–372. 21 indexed citations

17.

Levicán, Gloria, et al.. (2000). An RT-PCR artifact in the characterization of bacterial operons. Electronic Journal of Biotechnology. 3(3). 12–13. 11 indexed citations

18.

Bueno, Susan M., et al.. (1999). IST1 insertional inactivation of theresBgene: implications for phenotypic switching inThiobacillus ferrooxidans. FEMS Microbiology Letters. 175(2). 223–229. 24 indexed citations

19.

Holmes, David S., et al.. (1986). Biotechnology for the mining, metal-refining and fossil fuel processing industries : proceedings of a workshop held at Rensselaer Polytechnic Institute in Troy, New York, May 28-30, 1985. Wiley eBooks. 1 indexed citations

20.

Houston, B. Kent, et al.. (1976). Influence of multiple models on the behavior of institutionalized retarded children: Increased generalization to other models and other behaviors.. Journal of Consulting and Clinical Psychology. 44(4). 514–519. 7 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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