Daniel M. Ibrahim

7.2k total citations · 1 hit paper
21 papers, 3.3k citations indexed

About

Daniel M. Ibrahim is a scholar working on Molecular Biology, Plant Science and Genetics. According to data from OpenAlex, Daniel M. Ibrahim has authored 21 papers receiving a total of 3.3k indexed citations (citations by other indexed papers that have themselves been cited), including 20 papers in Molecular Biology, 9 papers in Plant Science and 4 papers in Genetics. Recurrent topics in Daniel M. Ibrahim's work include Genomics and Chromatin Dynamics (13 papers), RNA Research and Splicing (9 papers) and Chromosomal and Genetic Variations (7 papers). Daniel M. Ibrahim is often cited by papers focused on Genomics and Chromatin Dynamics (13 papers), RNA Research and Splicing (9 papers) and Chromosomal and Genetic Variations (7 papers). Daniel M. Ibrahim collaborates with scholars based in Germany, United States and France. Daniel M. Ibrahim's co-authors include Stefan Mundlos, Malte Spielmann, Cole Trapnell, Xingfan Huang, Xiaojie Qiu, Jay Shendure, Junyue Cao, Andrew J. Hill, Frank J. Steemers and Fan Zhang and has published in prestigious journals such as Nature, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Daniel M. Ibrahim

21 papers receiving 3.3k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

The single-cell transcriptional landscape of mammalian organogenesis

2019 2.2k citations Junyue Cao, Malte Spielmann et al. Nature profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Daniel M. Ibrahim Germany	16	2.5k	598	379	374	283	21	3.3k
Xingfan Huang United States	9	2.6k 1.0×	663 1.1×	540 1.4×	473 1.3×	132 0.5×	9	3.5k
Alon Goren United States	21	3.3k 1.3×	436 0.7×	638 1.7×	506 1.4×	193 0.7×	35	4.0k
Jonathan S. Packer United States	11	3.1k 1.2×	692 1.2×	713 1.9×	260 0.7×	112 0.4×	12	4.0k
Avi Srivastava United States	14	1.8k 0.7×	559 0.9×	428 1.1×	168 0.4×	103 0.4×	24	2.7k
Daniel Ramsköld Sweden	20	3.5k 1.4×	688 1.2×	1.1k 2.8×	479 1.3×	163 0.6×	32	4.5k
Lena Christiansen United States	10	4.1k 1.6×	894 1.5×	930 2.5×	345 0.9×	221 0.8×	13	5.0k
Raghav Chawla Switzerland	9	2.1k 0.8×	937 1.6×	498 1.3×	197 0.5×	105 0.4×	24	3.2k
Christopher S. McGinnis United States	11	1.7k 0.7×	809 1.4×	420 1.1×	179 0.5×	73 0.3×	12	2.7k
Beijing Wu United States	10	4.8k 1.9×	1.1k 1.8×	1.0k 2.7×	583 1.6×	365 1.3×	10	5.8k
Jonna Grimsby United States	12	3.4k 1.3×	1.2k 2.0×	866 2.3×	411 1.1×	235 0.8×	18	5.0k

Countries citing papers authored by Daniel M. Ibrahim

Since Specialization

Citations

This map shows the geographic impact of Daniel M. Ibrahim's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Daniel M. Ibrahim with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Daniel M. Ibrahim more than expected).

Fields of papers citing papers by Daniel M. Ibrahim

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Daniel M. Ibrahim. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Daniel M. Ibrahim. The network helps show where Daniel M. Ibrahim may publish in the future.

Co-authorship network of co-authors of Daniel M. Ibrahim

This figure shows the co-authorship network connecting the top 25 collaborators of Daniel M. Ibrahim. A scholar is included among the top collaborators of Daniel M. Ibrahim based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Daniel M. Ibrahim. Daniel M. Ibrahim is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Zehnder, Tobias, Andreas Magg, Damir Baranas̆ić, et al.. (2025). Conservation of regulatory elements with highly diverged sequences across large evolutionary distances. Nature Genetics. 57(6). 1524–1534. 4 indexed citations

Jerković, Ivana, et al.. (2024). Evolution and function of chromatin domains across the tree of life. Nature Structural & Molecular Biology. 31(12). 1824–1837. 6 indexed citations

Ibrahim, Daniel M.. (2024). Enhancer contacts during embryonic development show diverse interaction modes and modest yet significant increases upon gene activation. Nature Genetics. 56(4). 558–560. 1 indexed citations

Weischenfeldt, Joachim & Daniel M. Ibrahim. (2023). When 3D genome changes cause disease: the impact of structural variations in congenital disease and cancer. Current Opinion in Genetics & Development. 80. 102048–102048. 5 indexed citations

Mackowiak, Sebastian D., Henri Niskanen, Stefanie Grosswendt, et al.. (2020). Unblending of Transcriptional Condensates in Human Repeat Expansion Disease. Cell. 181(5). 1062–1079.e30. 129 indexed citations

Ibrahim, Daniel M. & Stefan Mundlos. (2020). Three-dimensional chromatin in disease: What holds us together and what drives us apart?. Current Opinion in Cell Biology. 64. 1–9. 43 indexed citations

Ibrahim, Daniel M. & Stefan Mundlos. (2020). The role of 3D chromatin domains in gene regulation: a multi-facetted view on genome organization. Current Opinion in Genetics & Development. 61. 1–8. 53 indexed citations

Despang, Alexandra, Robert Schöpflin, Martin Franke, et al.. (2019). Functional dissection of the Sox9–Kcnj2 locus identifies nonessential and instructive roles of TAD architecture. Nature Genetics. 51(8). 1263–1271. 193 indexed citations

Kraft, Katerina, Andreas Magg, Verena Heinrich, et al.. (2019). Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations. Nature Cell Biology. 21(3). 305–310. 96 indexed citations

10.

Cao, Junyue, Malte Spielmann, Xiaojie Qiu, et al.. (2019). The single-cell transcriptional landscape of mammalian organogenesis. Nature. 566(7745). 496–502. 2172 indexed citations breakdown →

11.

Hernández-Miranda, Luis R., Daniel M. Ibrahim, Pierre-Louis Ruffault, et al.. (2018). Mutation in LBX1/Lbx1 precludes transcription factor cooperativity and causes congenital hypoventilation in humans and mice. Proceedings of the National Academy of Sciences. 115(51). 13021–13026. 28 indexed citations

12.

Vallecillo-García, Pedro, Mickael Orgeur, Jürgen Stumm, et al.. (2017). Odd skipped-related 1 identifies a population of embryonic fibro-adipogenic progenitors regulating myogenesis during limb development. Nature Communications. 8(1). 1218–1218. 88 indexed citations

13.

Jerković, Ivana, Daniel M. Ibrahim, Guillaume Andrey, et al.. (2017). Genome-Wide Binding of Posterior HOXA/D Transcription Factors Reveals Subgrouping and Association with CTCF. PLoS Genetics. 13(1). e1006567–e1006567. 34 indexed citations

14.

Andrey, Guillaume, Robert Schöpflin, Ivana Jerković, et al.. (2016). Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding. Genome Research. 27(2). 223–233. 96 indexed citations

15.

Ibrahim, Daniel M., Naeimeh Tayebi, Alexej Knaus, et al.. (2015). A homozygous HOXD13 missense mutation causes a severe form of synpolydactyly with metacarpal to carpal transformation. American Journal of Medical Genetics Part A. 170(3). 615–621. 15 indexed citations

16.

Kraft, Katerina, Sinje Geuer, Wing Lee Chan, et al.. (2015). Deletions, Inversions, Duplications: Engineering of Structural Variants using CRISPR/Cas in Mice. Cell Reports. 10(5). 833–839. 151 indexed citations

17.

Hecht, Jochen, et al.. (2015). Saturation analysis of ChIP-seq data for reproducible identification of binding peaks. Genome Research. 25(9). 1391–1400. 14 indexed citations

18.

Kuss, Pia, Katerina Kraft, Jürgen Stumm, et al.. (2013). Regulation of cell polarity in the cartilage growth plate and perichondrium of metacarpal elements by HOXD13 and WNT5A. Developmental Biology. 385(1). 83–93. 57 indexed citations

19.

Ibrahim, Daniel M., Christian Rödelsperger, Asita C. Stiege, et al.. (2013). Distinct global shifts in genomic binding profiles of limb malformation-associated HOXD13 mutations. Genome Research. 23(12). 2091–2102. 24 indexed citations

20.

Spielmann, Malte, Francesco Brancati, Peter Krawitz, et al.. (2012). Homeotic Arm-to-Leg Transformation Associated with Genomic Rearrangements at the PITX1 Locus. The American Journal of Human Genetics. 91(4). 629–635. 83 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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