Daniel Faria

3.5k total citations · 2 hit papers
41 papers, 1.8k citations indexed

About

Daniel Faria is a scholar working on Molecular Biology, Artificial Intelligence and Information Systems. According to data from OpenAlex, Daniel Faria has authored 41 papers receiving a total of 1.8k indexed citations (citations by other indexed papers that have themselves been cited), including 33 papers in Molecular Biology, 18 papers in Artificial Intelligence and 5 papers in Information Systems. Recurrent topics in Daniel Faria's work include Biomedical Text Mining and Ontologies (26 papers), Semantic Web and Ontologies (16 papers) and Bioinformatics and Genomic Networks (12 papers). Daniel Faria is often cited by papers focused on Biomedical Text Mining and Ontologies (26 papers), Semantic Web and Ontologies (16 papers) and Bioinformatics and Genomic Networks (12 papers). Daniel Faria collaborates with scholars based in Portugal, United States and United Kingdom. Daniel Faria's co-authors include Cátia Pesquita, Francisco M. Couto, André O. Falcão, Phillip Lord, Hugo Bastos, Ian W. Taylor, David Warde-Farley, Rune Linding, Shelley B. Bull and Yongmei Liu and has published in prestigious journals such as SHILAP Revista de lepidopterología, Nature Biotechnology and PLoS ONE.

In The Last Decade

Daniel Faria

38 papers receiving 1.7k citations

Hit Papers

Dynamic modularity in protein interaction networks predic... 2009 2026 2014 2020 2009 2009 100 200 300 400 500

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Daniel Faria Portugal 15 1.5k 379 330 125 106 41 1.8k
Cátia Pesquita Portugal 20 1.7k 1.1× 568 1.5× 356 1.1× 182 1.5× 119 1.1× 66 2.1k
Lorraine Tanabe United States 13 1.9k 1.3× 831 2.2× 190 0.6× 62 0.5× 151 1.4× 19 2.3k
Francisco M. Couto Portugal 25 2.0k 1.3× 1.1k 2.8× 335 1.0× 253 2.0× 148 1.4× 138 2.6k
Jie Zheng United States 20 1.2k 0.8× 326 0.9× 93 0.3× 84 0.7× 138 1.3× 68 1.6k
Dexter Pratt United States 17 659 0.4× 241 0.6× 147 0.4× 74 0.6× 52 0.5× 31 1.1k
Xuequn Shang China 25 1.5k 1.0× 538 1.4× 387 1.2× 112 0.9× 113 1.1× 167 2.3k
Christine Chichester Switzerland 17 594 0.4× 246 0.6× 184 0.6× 64 0.5× 46 0.4× 31 958
Andra Waagmeester Netherlands 13 862 0.6× 127 0.3× 153 0.5× 47 0.4× 109 1.0× 30 1.2k
Juliane Fluck Germany 19 1.2k 0.8× 887 2.3× 256 0.8× 60 0.5× 69 0.7× 68 1.7k
Liat Ein‐Dor Israel 11 1.1k 0.8× 268 0.7× 114 0.3× 41 0.3× 113 1.1× 29 1.6k

Countries citing papers authored by Daniel Faria

Since Specialization
Citations

This map shows the geographic impact of Daniel Faria's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Daniel Faria with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Daniel Faria more than expected).

Fields of papers citing papers by Daniel Faria

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Daniel Faria. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Daniel Faria. The network helps show where Daniel Faria may publish in the future.

Co-authorship network of co-authors of Daniel Faria

This figure shows the co-authorship network connecting the top 25 collaborators of Daniel Faria. A scholar is included among the top collaborators of Daniel Faria based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Daniel Faria. Daniel Faria is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Faria, Daniel, et al.. (2024). The Immunopeptidomics Ontology (ImPO). Database. 2024. 1 indexed citations
2.
Bedran, Georges, Cátia Pesquita, Daniel Faria, et al.. (2023). Abstract 6577: CARMEN: A pan-HLA and pan-cancer proteogenomic database on antigen presentation to support cancer immunotherapy. Cancer Research. 83(7_Supplement). 6577–6577. 1 indexed citations
3.
Faria, Daniel, et al.. (2022). Ontologies and Knowledge Graphs in Oncology Research. Cancers. 14(8). 1906–1906. 18 indexed citations
4.
Lima, Beatriz Souza Leite Pires de, Daniel Faria, Francisco M. Couto, Isabel F. Cruz, & Cátia Pesquita. (2020). OAEI 2020 results for AML and AMLC.. 154–160. 3 indexed citations
5.
Faria, Daniel, et al.. (2019). AML and AMLC Results for OAEI 2019.. 101–106. 5 indexed citations
6.
Li, Huanyu, Zlatan Dragisic, Daniel Faria, et al.. (2019). User validation in ontology alignment: functional assessment and impact. The Knowledge Engineering Review. 34. 14 indexed citations
7.
Faria, Daniel, et al.. (2018). Tackling the challenges of matching biomedical ontologies. Journal of Biomedical Semantics. 9(1). 4–4. 27 indexed citations
8.
Faria, Daniel, et al.. (2018). Results of AML participation in OAEI 2018.. 125–131. 9 indexed citations
9.
Santos, Emanuel, Daniel Faria, Cátia Pesquita, & Francisco M. Couto. (2015). Ontology Alignment Repair through Modularization and Confidence-Based Heuristics. PLoS ONE. 10(12). e0144807–e0144807. 33 indexed citations
10.
Eckert, Kai, Daniel Faria, Alfio Ferrara, et al.. (2014). Results of the Ontology Alignment Evaluation Initiative 2014. SPIRE - Sciences Po Institutional REpository. 11 indexed citations
11.
Pesquita, Cátia, et al.. (2014). Building reference alignments for compound matching of multiple ontologies using OBO cross-products. 172–173. 7 indexed citations
12.
Faria, Daniel, Cátia Pesquita, Emanuel Santos, Isabel F. Cruz, & Francisco M. Couto. (2014). AgreementMakerLight 2.0: towards efficient large-scale ontology matching. International Semantic Web Conference. 457–460. 7 indexed citations
13.
Faria, Daniel, et al.. (2013). Agreement maker light results for OAEI 2013. International Semantic Web Conference. 101–108. 14 indexed citations
14.
Pesquita, Cátia, Daniel Faria, Emanuel Santos, & Francisco M. Couto. (2013). To repair or not to repair: reconciling correctness and coherence in ontology reference alignments. 13–24. 35 indexed citations
15.
Faria, Daniel, Andreas Schlicker, Cátia Pesquita, et al.. (2012). Mining GO Annotations for Improving Annotation Consistency. PLoS ONE. 7(7). e40519–e40519. 23 indexed citations
16.
Bastos, Hugo, et al.. (2011). The Biomedical Ontology Applications (BOA) Framework.. 1 indexed citations
17.
Simões, Tânia, Josip Blonder, Daniel Faria, et al.. (2011). Molecular profiling of the human nasal epithelium: A proteomics approach. Journal of Proteomics. 75(1). 56–69. 21 indexed citations
18.
Hood, Brian L., Daniel Faria, Paula Pacheco, et al.. (2010). Serum proteomics signature of Cystic Fibrosis patients: A complementary 2-DE and LC–MS/MS approach. Journal of Proteomics. 74(1). 110–126. 22 indexed citations
19.
Faria, Daniel, António E. N. Ferreira, & André O. Falcão. (2009). Enzyme classification with peptide programs: a comparative study. BMC Bioinformatics. 10(1). 231–231. 2 indexed citations
20.
Pesquita, Cátia, Daniel Faria, Hugo Bastos, et al.. (2008). Metrics for GO based protein semantic similarity: a systematic evaluation. BMC Bioinformatics. 9(S5). S4–S4. 246 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact

Rankless by CCL
2026