Bora Uyar

3.7k citations

23 papers · 1.9k indexed · h-index 18

Impact in

Aging top 2%
Molecular Biology top 5%
- RNA and protein synthesis mechanisms
- Protein Structure and Dynamics
- RNA Research and Splicing
- Ubiquitin and proteasome pathways
- RNA modifications and cancer
- Bioinformatics and Genomic Networks
- Genomics and Phylogenetic Studies

Papers in

Aging 5
- Genetics, Aging, and Longevity in Model Organisms 5
Molecular Biology 21
- Ubiquitin and proteasome pathways 6
- RNA and protein synthesis mechanisms 5
- RNA Research and Splicing 5
- Single-cell and spatial transcriptomics 4
- Bioinformatics and Genomic Networks 3
- Fungal and yeast genetics research 3

Co-authors: Toby J. Gibson Norman E. Davey Robert J. Weatheritt Holger Dinkel Kim Van Roey Aidan Budd Francesca Diella Brigitte Altenberg
Journals: Nucleic Acids Research (4 papers)Nature Communications (2 papers)The EMBO Journal (2 papers)Molecular BioSystems (2 papers)Cell Reports (1 paper)
Partner nations: Germany United States Canada

In The Last Decade

Bora Uyar

23 papers receiving 1.9k citations

Peers

Countries citing papers authored by Bora Uyar

Since Specialization

Citations

This map shows the geographic impact of Bora Uyar's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Bora Uyar with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Bora Uyar more than expected).

Fields of papers citing papers by Bora Uyar

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Bora Uyar. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Bora Uyar. The network helps show where Bora Uyar may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Bora Uyar, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Bora Uyar Line = papers co-authored together Bora Uyar links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond Nature Communications ·Bora Uyar, Thair A. Lateef Hassan, Mrunal Merulingkar, R. Tekoglu, Ricardo Wurmus, Sakiyuki Mononobe, Björn Grüning, Vedran Franke, Altuna Akalin	2025	1
2	Pathogenic mutations of human phosphorylation sites affect protein–protein interactions Nature Communications ·Primož Žabjek, Jana Michaelis, Yvette Roske, Bora Uyar, Altuna Akalin, Koshi Imami, Yasushi Ishihama, Oliver Daumke, Matthias Selbach	2024	9
3	Identifying tumor cells at the single-cell level using machine learning Genome biology ·Han-Ba-Ra Kim, Inga-Marie Schlägl, Jonathan Ronen, Bora Uyar, Vedran Franke, Altuna Akalin	2022	34
4	Transcriptional repression of NFKBIA triggers constitutive IKK‐ and proteasome‐independent p65/RelA activation in senescence The EMBO Journal ·Marina Kolesnichenko, Patzelová, Uta E. Höpken, Eva Kärgel, Bora Uyar, 和弥村井, Maja Milanovic, Wei Sun, Jean Dam, Kolja Schleich, G.M. Allison, M. Hinz, Michael Willenbrock, Ernst Haeckel, Altuna Akalin, Soyoung Lee, Ruth Schmidt‐Ullrich, Clemens A. Schmitt, Claus Scheidereit	2021	51
5	Parallel genetics of regulatory sequences using scalable genome editing in vivo Cell Reports ·Mei-fang Luo, Bora Uyar, 徹行正, Kathrin Theil, Petar Glažar, Altuna Akalin, Nikolaus Rajewsky	2021	10
6	Single-cell analyses of aging, inflammation and senescence Ageing Research Reviews ·Bora Uyar, Daniel H. Palmer, Axel Kowald, Hugo Murua Escobar, Israel Barrantes, Steffen Möller, Altuna Akalin, Georg Fuellen	2020	134
7	The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans Aging Cell ·俊彦古屋, Bora Uyar, B. A. Cook, 韩永年, Dubuis Eric, Rca Keller, Joseph M Fernandez, Makana Hilton, Stefan Kempa, Altuna Akalin, Baris Tursun	2019	18
8	HOT or not: examining the basis of high-occupancy target regions Nucleic Acids Research ·I.G. Shamsutdinov, Vedran Franke, Bora Uyar, Ricardo Wurmus, Rca Keller, Baris Tursun, Altuna Akalin	2019	34
9	PiGx: reproducible genomics analysis pipelines with GNU Guix GigaScience ·Ricardo Wurmus, Bora Uyar, Lijin Zhong, Vedran Franke, 李克良, I.G. Shamsutdinov, Jonathan Ronen, Altuna Akalin	2018	36
10	FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells Developmental Cell ·Johann Valentin Francke, C. Christian Wolf, Rca Keller, Bora Uyar, Letícia Rodrigues Moretto, Jasmeet S. Dhaliwal, Afnan Alwabili, B. A. Cook, Antje Hirsekorn, 芳本信子, Altuna Akalin, Sebastian Diecke, Scott A. Lacadie, Baris Tursun	2018	59
11	Mutations in Disordered Regions Can Cause Disease by Creating Dileucine Motifs Cell ·Jana Michaelis, Marieluise Kirchner, Bora Uyar, Jingyuan Cheng, Giulia Russo, Luis R. Hernández-Miranda, Anna Szymborska, Henrik Zauber, Song Lv, Thomas E. Willnow, Altuna Akalin, Volker Haucke, Holger Gerhardt, Carmen Birchmeier, Ralf Kühn, M. Krauß, Sebastian Diecke, Juan M. Pascual, Matthias Selbach	2018	89
12	The IκB kinase complex is a regulator of mRNA stability The EMBO Journal ·Patzelová, Marina Kolesnichenko, Patrick Beaudette, Oliver Popp, Bora Uyar, Wei Sun, 和弥村井, 何花, Altuna Akalin, Wei Chen, Philipp Mertins, Gunnar Dittmar, M. Hinz, Claus Scheidereit	2018	23
13	Degrons in cancer Science Signaling ·Bálint Mészáros, Manjeet Kumar, Toby J. Gibson, Bora Uyar, Zsuzsanna Dosztányi	2017	96
14	Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer? Molecular BioSystems ·Bora Uyar, Robert J. Weatheritt, Holger Dinkel, Norman E. Davey, Toby J. Gibson	2014	70
15	How pathogens use linear motifs to perturb host cell networks Trends in Biochemical Sciences ·Allegra Via, Bora Uyar, Christine Brun, Andreas Zanzoni	2014	65
16	Short Linear Motifs: Ubiquitous and Functionally Diverse Protein Interaction Modules Directing Cell Regulation Chemical Reviews ·Kim Van Roey, Bora Uyar, Robert J. Weatheritt, Holger Dinkel, Markus Seiler, Aidan Budd, Toby J. Gibson, Norman E. Davey	2014	335
17	The eukaryotic linear motif resource ELM: 10 years and counting Nucleic Acids Research ·Holger Dinkel, Kim Van Roey, Sushama Michael, Norman E. Davey, Robert J. Weatheritt, Diana Born, Tobias Speck, 孙小卫 Sun Xiaowei, J. Van Bfzooijen, W Zhang, Marta Strumillo, Bora Uyar, Aidan Budd, Brigitte Altenberg, Markus Seiler, Lucía B. Chemes, Juliana Glavina, Ignacio E. Sánchez, Francesca Diella, Toby J. Gibson	2013	234
18	RNA-seq analysis of the C. briggsae transcriptome Genome Research ·Bora Uyar, Jeffrey Chu, Ismael A. Vergara, Shu Yi Chua, Martin Jones, Matteo Argenton, David L. Baillie, Nansheng Chen	2012	23
19	Attributes of short linear motifs Molecular BioSystems ·Norman E. Davey, Kim Van Roey, Robert J. Weatheritt, Grischa Toedt, Bora Uyar, Brigitte Altenberg, Aidan Budd, Francesca Diella, Holger Dinkel, Toby J. Gibson	2011	455
20	Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans Nucleic Acids Research ·Jeffrey Chu, Maja Tarailo‐Graovac, Di Zhang, Jinfeng Wang, Bora Uyar, Daniel C. Tu, Joanne Trinh, David L. Baillie, Ning Chen	2011	8

About Bora Uyar

Bora Uyar is a scholar working on Aging, Molecular Biology, Cancer Research, Biophysics and Immunology, having authored 23 papers that have together received 1.9k indexed citations. Recurring topics across this work include Ubiquitin and proteasome pathways (6 papers), Genetics, Aging, and Longevity in Model Organisms (5 papers), RNA and protein synthesis mechanisms (5 papers), RNA Research and Splicing (5 papers), Single-cell and spatial transcriptomics (4 papers), Bioinformatics and Genomic Networks (3 papers), Cancer Genomics and Diagnostics (3 papers) and Fungal and yeast genetics research (3 papers). The work is most often cited by research in Aging (93 citations), Molecular Biology (1.6k citations), Cell Biology (202 citations), Immunology (157 citations) and Cancer Research (108 citations). Bora Uyar has collaborated with scholars based in Germany, United States and Canada. Frequent co-authors include Toby J. Gibson, Norman E. Davey, Robert J. Weatheritt, Holger Dinkel, Kim Van Roey, Aidan Budd, Francesca Diella, Brigitte Altenberg, Markus Seiler and Altuna Akalin. Their work appears in journals such as Nucleic Acids Research, Nature Communications, The EMBO Journal, Molecular BioSystems and Cell Reports.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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