Baochen Shi

2.2k citations

25 papers · 993 indexed · h-index 14

Impact in

Periodontics top 1%
- Oral microbiology and periodontitis research
- Oral Health Pathology and Treatment
Dermatology top 2%
- Dermatology and Skin Diseases
- Acne and Rosacea Treatments and Effects

Papers in ⓘ

Periodontics 6
- Oral microbiology and periodontitis research 6
- Oral Health Pathology and Treatment 3
Aging 2

Co-authors: Huiying Li (12 shared papers)Dezhi Kang (3 shared papers)Noah Craft (3 shared papers)Emma Barnard (5 shared papers)Renate Lux (5 shared papers)Susan Kinder Haake (2 shared papers)Perry R. Klokkevold (2 shared papers)Marie Crisel B. Erfe (1 shared paper)
Journals: Scientific Reports (3 papers)Biochemical and Biophysical Research Communications (2 papers)American Journal of Orthodontics and Dentofacial Orthopedics (1 paper)BMC Bioinformatics (1 paper)Journal of Theoretical Biology (1 paper)
Partner nations: United States China France

In The Last Decade

Baochen Shi

24 papers receiving 964 citations

Peers

Countries citing papers authored by Baochen Shi

Since Specialization

Citations

This map shows the geographic impact of Baochen Shi's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Baochen Shi with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Baochen Shi more than expected).

Fields of papers citing papers by Baochen Shi

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Baochen Shi. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Baochen Shi. The network helps show where Baochen Shi may publish in the future.

Co-authors

The 25 scholars most cited alongside Baochen Shi, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Baochen Shi Line = papers co-authored together Baochen Shi links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 25 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	The balance of metagenomic elements shapes the skin microbiome in acne and health Scientific Reports ·Emma Barnard, Baochen Shi, Dezhi Kang, Noah Craft, Huiying Li	2016	162
2	Dynamic Changes in the Subgingival Microbiome and Their Potential for Diagnosis and Prognosis of Periodontitis mBio ·Baochen Shi, Michaela Chang, John Martin, Makedonka Mitreva, Renate Lux, Perry R. Klokkevold, Erica Sodergren, George M. Weinstock, Susan Kinder Haake, Huiying Li	2015	132
3	Vitamin B ₁₂ modulates the transcriptome of the skin microbiota in acne pathogenesis Science Translational Medicine ·Dezhi Kang, Baochen Shi, Marie Crisel B. Erfe, Noah Craft, Huiying Li	2015	113
4	The subgingival microbiome associated with periodontitis in type 2 diabetes mellitus The ISME Journal ·Baochen Shi, Renate Lux, Perry R. Klokkevold, Michaela Chang, Emma Barnard, Susan Kinder Haake, Huiying Li	2019	81
5	Anacapa Toolkit : An environmental DNA toolkit for processing multilocus metabarcode datasets Methods in Ecology and Evolution ·Emily Curd, Zachary Gold, Gaurav S. Kandlikar, Jesse Gomer, Max Ogden, Taylor O’Connell, Lenore Pipes, Teia M. Schweizer, Laura Rabichow, Meixi Lin, Baochen Shi, Paul H. Barber, Nathan J. B. Kraft, Robert K. Wayne, Rachel S. Meyer	2019	79
6	The impact of fixed orthodontic appliances and clear aligners on the oral microbiome and the association with clinical parameters: A longitudinal comparative study American Journal of Orthodontics and Dentofacial Orthopedics ·Bhumika Shokeen, Edward Viloria, Emily Duong, Masooma Rizvi, Guiselle Murillo, Joseph Mullen, Baochen Shi, Márcia Dinis, Huiying Li, Nini Chaichanasakul Tran, Renate Lux, Tingxi Wu	2022	58
7	The Denture-Associated Oral Microbiome in Health and Stomatitis mSphere ·Baochen Shi, Tingxi Wu, Jeffrey S. McLean, Anna Edlund, Youngik Young, Xuesong He, Hongyang Lv, Xuedong Zhou, Wenyuan Shi, Huiying Li, Renate Lux	2016	54
8	Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray Genome Research ·Housheng He, Jie Wang, Tao Liu, X. Shirley Liu, Tiantian Li, Yunfei Wang, Zuwei Qian, Haixia Zheng, Xiaopeng Zhu, Tao Wu, Baochen Shi, Wei Deng, Wei Zhou, Geir Skogerbø, Runsheng Chen	2007	48
9	Evolution and migration history of the Chinese population inferred from Chinese Y-chromosome evidence Journal of Human Genetics ·Wei Deng, Baochen Shi, Xiaoli He, Zhihua Zhang, Jun Xu, Biao Li, Jian Yang, Lunjiang Ling, Chengping Dai, Boqin Qiang, Yan Shen, Runsheng Chen	2004	42
10	GLUT1 overexpression enhances glucose metabolism and promotes neonatal heart regeneration Scientific Reports ·Viviana M. Fajardo, Iris Feng, Bao Ying Chen, Cesar A. Perez-Ramirez, Baochen Shi, Peter M. Clark, Rong Tian, Ching‐Ling Lien, Matteo Pellegrini, Heather R. Christofk, Haruko Nakano, Atsushi Nakano	2021	41
11	Cervical-Vaginal Microbiome and Associated Cytokine Profiles in a Prospective Study of HPV 16 Acquisition, Persistence, and Clearance Frontiers in Cellular and Infection Microbiology ·Anna‐Barbara Moscicki, Baochen Shi, Hazel Huang, Emma Barnard, Huiying Li	2020	38
12	Integrated analysis of multiple data sources reveals modular structure of biological networks Biochemical and Biophysical Research Communications ·Hongchao Lu, Baochen Shi, Gaowei Wu, Yong Zhang, Xiaopeng Zhu, Zhihua Zhang, Changning Liu, Yi Zhao, Tao Wu, Jie Wang, Runsheng Chen	2006	27
13	Conservation analysis of small RNA genes in Escherichia coli Bioinformatics ·Yong Zhang, Zhihua Zhang, Lunjiang Ling, Baochen Shi, Runsheng Chen	2004	27
14	Phylophenetic properties of metabolic pathway topologies as revealed by global analysis BMC Bioinformatics ·Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhihua Zhang, Xiaopeng Zhu, Zefeng Zhang, Shiwei Sun, Hongchao Lu, Baochen Shi, Runsheng Chen	2006	24
15	Identifying Hfq-binding small RNA targets in Escherichia coli Biochemical and Biophysical Research Communications ·Yong Zhang, Shiwei Sun, Tao Wu, Jie Wang, Changning Liu, Lan Chen, Xiaopeng Zhu, Yi Zhao, Zhihua Zhang, Baochen Shi, Hongchao Lu, Runsheng Chen	2006	13
16	Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages BMC Microbiology ·Lucy S. Cheng, Laura J. Marinelli, Noël Grosset, Sorel Fitz‐Gibbon, Charles A. Bowman, Brian Q. Dang, Daniel A. Russell, Deborah Jacobs-Sera, Baochen Shi, Matteo Pellegrini, Jeff F. Miller, Michel Gautier, Graham F. Hatfull, Robert L. Modlin	2018	13
17	Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites BMC Genomics ·Baochen Shi, Xiangqian Guo, Tao Wu, Sitong Sheng, Jie Wang, Geir Skogerbø, Xiaopeng Zhu, Runsheng Chen	2009	11
18	Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors PLoS Computational Biology ·Zhihua Zhang, Changning Liu, Geir Skogerbø, Xiaopeng Zhu, Hongchao Lu, Lan Chen, Baochen Shi, Yong Zhang, Jie Wang, Tao Wu, Runsheng Chen	2006	11
19	MG-MLST: Characterizing the Microbiome at the Strain Level in Metagenomic Data Microorganisms ·Nathanael J. Bangayan, Baochen Shi, Jerry Trinh, Emma Barnard, Gabriela Kasimatis, Emily Curd, Huiying Li	2020	6
20	Clinical and Microbial Changes in Orthodontic Patients Using Clear Aligners Vs. Fixed Appliances Journal of the California Dental Association ·Joseph Mullen, Melissa Agnello, Edward Viloria, Kenneth Chien, Emily Duong, Masuma Rizvi, Pega Hajian, Huiying Li, Baochen Shi, Kang Ting, Wenyuan Shi, Renate Lux, Tingxi Wu	2019	3

About Baochen Shi

Baochen Shi is a scholar working on Periodontics, Aging, Dermatology, Orthodontics and Microbiology, having authored 25 papers that have together received 993 indexed citations. Recurring topics across this work include Oral microbiology and periodontitis research (6 papers), Acne and Rosacea Treatments and Effects (4 papers), Dermatology and Skin Diseases (4 papers), Bacteriophages and microbial interactions (3 papers), Genomics and Chromatin Dynamics (3 papers), Gut microbiota and health (3 papers), RNA and protein synthesis mechanisms (3 papers) and Oral Health Pathology and Treatment (3 papers). The work is most often cited by research in Periodontics (269 citations), Dermatology (241 citations), Orthodontics (60 citations), Aging (18 citations) and Microbiology (58 citations). Baochen Shi has collaborated with scholars based in United States, China and France. Frequent co-authors include Huiying Li, Dezhi Kang, Noah Craft, Emma Barnard, Renate Lux, Susan Kinder Haake, Perry R. Klokkevold, Marie Crisel B. Erfe, Runsheng Chen and Zhihua Zhang. Their work appears in journals such as Scientific Reports, Biochemical and Biophysical Research Communications, American Journal of Orthodontics and Dentofacial Orthopedics, BMC Bioinformatics and Journal of Theoretical Biology.

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