B. Franklin Pugh

18.0k total citations · 7 hit papers
113 papers, 12.8k citations indexed

About

B. Franklin Pugh is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, B. Franklin Pugh has authored 113 papers receiving a total of 12.8k indexed citations (citations by other indexed papers that have themselves been cited), including 111 papers in Molecular Biology, 11 papers in Genetics and 10 papers in Plant Science. Recurrent topics in B. Franklin Pugh's work include Genomics and Chromatin Dynamics (87 papers), RNA Research and Splicing (58 papers) and RNA and protein synthesis mechanisms (41 papers). B. Franklin Pugh is often cited by papers focused on Genomics and Chromatin Dynamics (87 papers), RNA Research and Splicing (58 papers) and RNA and protein synthesis mechanisms (41 papers). B. Franklin Pugh collaborates with scholars based in United States, China and France. B. Franklin Pugh's co-authors include Cizhong Jiang, Ho Sung Rhee, Robert Tjian, Sara J. Zanton, Bryan J. Venters, István Albert, Kathryn L. Huisinga, William Lai, Naoko Tanese and Michael M. Cox and has published in prestigious journals such as Nature, Science and Cell.

In The Last Decade

B. Franklin Pugh

112 papers receiving 12.6k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Nucleosome positioning and gene regulation: advances through genomics

2009 783 citations Cizhong Jiang, B. Franklin Pugh profile →
Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution

2011 566 citations Ho Sung Rhee, B. Franklin Pugh profile →
Nucleosome organization in the Drosophila genome

2008 559 citations Travis N. Mavrich, Cizhong Jiang et al. Nature profile →
Transcription from a TATA-less promoter requires a multisubunit TFIID complex.

1991 556 citations B. Franklin Pugh et al. profile →
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome

2007 530 citations Travis N. Mavrich, Stephan C. Schuster et al. Nature profile →
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

2008 511 citations Travis N. Mavrich, Bryan J. Venters et al. Genome Research profile →
Identification and Distinct Regulation of Yeast TATA Box-Containing Genes

2004 508 citations B. Franklin Pugh et al. profile →

Peers

Countries citing papers authored by B. Franklin Pugh

Since Specialization

Citations

This map shows the geographic impact of B. Franklin Pugh's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by B. Franklin Pugh with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites B. Franklin Pugh more than expected).

Fields of papers citing papers by B. Franklin Pugh

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by B. Franklin Pugh. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by B. Franklin Pugh. The network helps show where B. Franklin Pugh may publish in the future.

Co-authorship network of co-authors of B. Franklin Pugh

This figure shows the co-authorship network connecting the top 25 collaborators of B. Franklin Pugh. A scholar is included among the top collaborators of B. Franklin Pugh based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with B. Franklin Pugh. B. Franklin Pugh is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	GenoPipe: identifying the genotype of origin within (epi)genomic datasets 2023 ·Nucleic Acids Research ·(unknown), Divyanshi Srivastava, B. Franklin Pugh, William Lai	1
2	Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae 2021 ·eLife ·Tingting Zhao, Irina O. Vvedenskaya, William Lai, Shrabani Basu, B. Franklin Pugh, Bryce E. Nickels, Craig D. Kaplan	5
3	A high-resolution protein architecture of the budding yeast genome 2021 ·Nature ·Matthew J. Rossi, (unknown), William Lai, Naomi Yamada, Nitika Badjatia, Chitvan Mittal, Guray Kuzu, (unknown), Nina Farrell, (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), (unknown), Shaun Mahony, B. Franklin Pugh	126
4	Acute stress drives global repression through two independent RNA polymerase II stalling events in Saccharomyces 2021 ·Cell Reports ·Nitika Badjatia, Matthew J. Rossi, Alain R. Bataille, Chitvan Mittal, William Lai, B. Franklin Pugh	11
5	Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes 2020 ·Nucleic Acids Research ·Naomi Yamada, Matthew J. Rossi, Nina Farrell, B. Franklin Pugh, Shaun Mahony	2
6	Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae 2020 ·Genome biology ·Chenxi Qiu, Huiyan Jin, Irina O. Vvedenskaya, (unknown), Tingting Zhao, Indranil Malik, (unknown), Scott Schwartz, Ping Cui, Pavel Čabart, (unknown), William Lai, Richard P. Metz, Charles D. Johnson, Sing-Hoi Sze, B. Franklin Pugh, Bryce E. Nickels, Craig D. Kaplan	30
7	ChExMix: A Method for Identifying and Classifying Protein–DNA Interaction Subtypes 2020 ·Journal of Computational Biology ·Naomi Yamada, (unknown), B. Franklin Pugh, Shaun Mahony	5
8	Characterizing protein–DNA binding event subtypes in ChIP-exo data 2018 ·Bioinformatics ·Naomi Yamada, William Lai, Nina Farrell, B. Franklin Pugh, Shaun Mahony	17
9	Genome-wide determinants of sequence-specific DNA binding of general regulatory factors 2018 ·Genome Research ·Matthew J. Rossi, William Lai, B. Franklin Pugh	29
10	ATF4 Gene Network Mediates Cellular Response to the Anticancer PAD Inhibitor YW3-56 in Triple-Negative Breast Cancer Cells 2015 ·Molecular Cancer Therapeutics ·Shu Wang, Xiangyun Amy Chen, Jing Hu, (unknown), Yunfei Li, Ka Yim Chan-Salis, Ying Gu, Gong Chen, Craig J. Thomas, B. Franklin Pugh, Yanming Wang	55
11	Genome-Wide Organization of GATA1 and TAL1 Determined at High Resolution 2015 ·Molecular and Cellular Biology ·G. Celine Han, Vinesh Vinayachandran, Alain R. Bataille, Bongsoo Park, Ka Yim Chan-Salis, Cheryl A. Keller, Maria Long, Shaun Mahony, Ross C. Hardison, B. Franklin Pugh	27
12	Protein–DNA binding in high-resolution 2015 ·Critical Reviews in Biochemistry and Molecular Biology ·Shaun Mahony, B. Franklin Pugh	35
13	Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium 2012 ·Genome Research ·Gue Su Chang, Angelika A. Noegel, Travis N. Mavrich, Rolf Müller, Lynn Tomsho, (unknown), Marius Felder, Cizhong Jiang, Ludwig Eichinger, Gernot Glöckner, Stephan C. Schuster, B. Franklin Pugh	24
14	Genome-Wide Transcriptional Dependence on Conserved Regions of Mot1 2011 ·Molecular and Cellular Biology ·Bryan J. Venters, (unknown), (unknown), B. Franklin Pugh	5
15	A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome 2009 ·Genome Research ·Bryan J. Venters, B. Franklin Pugh	145
16	Interaction of Transcriptional Regulators with Specific Nucleosomes across the Saccharomyces Genome 2009 ·Molecular Cell ·(unknown), Ho Sung Rhee, Cizhong Jiang, B. Franklin Pugh	94
17	NELF and GAGA Factor Are Linked to Promoter-Proximal Pausing at Many Genes in Drosophila 2008 ·Molecular and Cellular Biology ·Chanhyo Lee, Xiaoyong Li, Aaron Hechmer, Michael B. Eisen, Mark D. Biggin, Bryan J. Venters, Cizhong Jiang, Jian Li, B. Franklin Pugh, David S. Gilmour	175
18	Genome-Wide Relationships between TAF1 and Histone Acetyltransferases in Saccharomyces cerevisiae 2006 ·Molecular and Cellular Biology ·(unknown), B. Franklin Pugh	50
19	Structural and Functional Analysis of Mutations along the Crystallographic Dimer Interface of the Yeast TATA Binding Protein 2003 ·Molecular and Cellular Biology ·(unknown), (unknown), Kathryn L. Huisinga, (unknown), B. Franklin Pugh	16
20	Cloning and Biochemical Characterization of TAF-172, a Human Homolog of Yeast Mot1 1998 ·Molecular and Cellular Biology ·(unknown), David Auble, B. Franklin Pugh	61

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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