Avanti Shrikumar

8.0k total citations · 3 hit papers
13 papers, 1.1k citations indexed

About

Avanti Shrikumar is a scholar working on Molecular Biology, Cancer Research and Surgery. According to data from OpenAlex, Avanti Shrikumar has authored 13 papers receiving a total of 1.1k indexed citations (citations by other indexed papers that have themselves been cited), including 11 papers in Molecular Biology, 3 papers in Cancer Research and 1 paper in Surgery. Recurrent topics in Avanti Shrikumar's work include Genomics and Chromatin Dynamics (8 papers), RNA Research and Splicing (5 papers) and RNA and protein synthesis mechanisms (5 papers). Avanti Shrikumar is often cited by papers focused on Genomics and Chromatin Dynamics (8 papers), RNA Research and Splicing (5 papers) and RNA and protein synthesis mechanisms (5 papers). Avanti Shrikumar collaborates with scholars based in United States, Hungary and United Kingdom. Avanti Shrikumar's co-authors include Anshul Kundaje, Joseph A. Wamstad, Laurie A. Boyer, Amr M. Alexandari, Julia Zeitlinger, Žiga Avsec, Julien Gagneur, Robin Fropf, Sabrina Krueger and Khyati Dalal and has published in prestigious journals such as Science, Cell and Nature Genetics.

In The Last Decade

Avanti Shrikumar

13 papers receiving 1.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage

2012 462 citations Joseph A. Wamstad, J M Alexander et al. Cell profile →
Base-resolution models of transcription-factor binding reveal soft motif syntax

2021 294 citations Žiga Avsec, Melanie Weilert et al. Nature Genetics profile →
Short tandem repeats bind transcription factors to tune eukaryotic gene expression

2023 98 citations Amr M. Alexandari, Michael G.B. Hayes et al. Science profile →

Peers

Avanti Shrikumar

MB

GENET

CR

SURGE

CCM

Dekker C. Deacon United States

Joaquín Custodio Sweden

Mélissa Beaudoin Canada

Andrey Poleshko United States

Bogac L. Kaynak Finland

Jorge Oliveira Portugal

Gillian Carpenter United Kingdom

Eleonora de Klerk Netherlands

Sharan Janjuha Switzerland

Catherine Naughton United Kingdom

Dekker C. Deacon United States

Avanti Shrikumar

607 ×0.6

MB

114 ×0.6

GENET

80 ×0.7

CR

59 ×0.6

SURGE

74 ×1.0

CCM

Citations per year, relative to Avanti Shrikumar Avanti Shrikumar (= 1×) peers Dekker C. Deacon

Countries citing papers authored by Avanti Shrikumar

Since Specialization

Citations

This map shows the geographic impact of Avanti Shrikumar's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Avanti Shrikumar with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Avanti Shrikumar more than expected).

Fields of papers citing papers by Avanti Shrikumar

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Avanti Shrikumar. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Avanti Shrikumar. The network helps show where Avanti Shrikumar may publish in the future.

Co-authorship network of co-authors of Avanti Shrikumar

This figure shows the co-authorship network connecting the top 25 collaborators of Avanti Shrikumar. A scholar is included among the top collaborators of Avanti Shrikumar based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Avanti Shrikumar. Avanti Shrikumar is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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13 of 13 papers shown

1.

Alexandari, Amr M., Michael G.B. Hayes, Emil Marklund, et al.. (2023). Short tandem repeats bind transcription factors to tune eukaryotic gene expression. Science. 381(6664). eadd1250–eadd1250. 98 indexed citations breakdown →

2.

Nair, Surag, Avanti Shrikumar, Jacob Schreiber, & Anshul Kundaje. (2022). fastISM: performant in silico saturation mutagenesis for convolutional neural networks. Bioinformatics. 38(9). 2397–2403. 14 indexed citations

3.

Cochran, Kelly, Divyanshi Srivastava, Avanti Shrikumar, et al.. (2022). Domain-adaptive neural networks improve cross-species prediction of transcription factor binding. Genome Research. 32(3). 512–523. 19 indexed citations

4.

Alexandari, Amr M., Michael G.B. Hayes, Julia M. Schaepe, et al.. (2022). Short tandem repeats recruit transcription factors to tune eukaryotic gene expression. Biophysical Journal. 121(3). 287a–288a. 1 indexed citations

5.

Roy, Emilie Le, Matthew A. Charette, Paul B. Henderson, et al.. (2021). Controls on barium and radium-226 distributions along GEOTRACES GP15. Goldschmidt2021 abstracts. 1 indexed citations

6.

Avsec, Žiga, Melanie Weilert, Avanti Shrikumar, et al.. (2021). Base-resolution models of transcription-factor binding reveal soft motif syntax. Nature Genetics. 53(3). 354–366. 294 indexed citations breakdown →

7.

Tseng, Alex M., Avanti Shrikumar, & Anshul Kundaje. (2020). Fourier-transform-based attribution priors improve the interpretability and stability of deep learning models for genomics. Neural Information Processing Systems. 33. 1913–1923. 2 indexed citations

8.

Shrikumar, Avanti, et al.. (2019). GkmExplain: fast and accurate interpretation of nonlinear gapped k -mer SVMs. Bioinformatics. 35(14). i173–i182. 30 indexed citations

9.

Greenside, Peyton, et al.. (2019). Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays. PLoS ONE. 14(6). e0218073–e0218073. 59 indexed citations

10.

Shrikumar, Avanti & Anshul Kundaje. (2019). Calibration with Bias-Corrected Temperature Scaling Improves Domain Adaptation Under Label Shift in Modern Neural Networks.. 2 indexed citations

11.

Shrikumar, Avanti, Katherine Tian, Anna Shcherbina, et al.. (2018). TF-MoDISco v0.4.2.2-alpha: Technical Note. arXiv (Cornell University). 8 indexed citations

12.

O’Meara, Caitlin C., Joseph A. Wamstad, Rachel A. Gladstone, et al.. (2014). Transcriptional Reversion of Cardiac Myocyte Fate During Mammalian Cardiac Regeneration. Circulation Research. 116(5). 804–815. 119 indexed citations

13.

Wamstad, Joseph A., J M Alexander, Rebecca Truty, et al.. (2012). Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage. Cell. 151(1). 206–220. 462 indexed citations breakdown →

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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