Avanti Shrikumar

8.0k citations

13 papers · 1.1k indexed · 3 hit papers · h-index 9

Co-authors: Anshul Kundaje Joseph A. Wamstad Laurie A. Boyer Amr M. Alexandari Julia Zeitlinger Žiga Avsec Julien Gagneur Robin Fropf
Topics: Genomics and Chromatin Dynamics (8 papers)RNA Research and Splicing (5 papers)RNA and protein synthesis mechanisms (5 papers)
Cited by: Molecular Biology Cancer Research Genetics
Journals: Science Cell Nature Genetics
Partner nations: United States Hungary United Kingdom

In The Last Decade

Avanti Shrikumar

13 papers receiving 1.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage

2012 462 citations Joseph A. Wamstad, J M Alexander et al. Cell profile →
Base-resolution models of transcription-factor binding reveal soft motif syntax

2021 294 citations Žiga Avsec, Melanie Weilert et al. Nature Genetics profile →
Short tandem repeats bind transcription factors to tune eukaryotic gene expression

2023 98 citations Amr M. Alexandari, Michael G.B. Hayes et al. Science profile →

Peers

Countries citing papers authored by Avanti Shrikumar

Since Specialization

Citations

This map shows the geographic impact of Avanti Shrikumar's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Avanti Shrikumar with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Avanti Shrikumar more than expected).

Fields of papers citing papers by Avanti Shrikumar

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Avanti Shrikumar. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Avanti Shrikumar. The network helps show where Avanti Shrikumar may publish in the future.

Co-authorship network of co-authors of Avanti Shrikumar

This figure shows the co-authorship network connecting the top 25 collaborators of Avanti Shrikumar. A scholar is included among the top collaborators of Avanti Shrikumar based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Avanti Shrikumar. Avanti Shrikumar is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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13 of 13 papers shown

#	Work	Indexed citations
1	Short tandem repeats bind transcription factors to tune eukaryotic gene expressionbreakdown → 2023 ·Science ·(unknown),Amr M. Alexandari,Michael G.B. Hayes,Emil Marklund,Julia M. Schaepe,Arjun K. Aditham,Nilay Shah,Peter Suzuki,Avanti Shrikumar,Ariel Afek,William J. Greenleaf,Raluca Gordân,Julia Zeitlinger,Anshul Kundaje,Polly M. Fordyce	98
2	fastISM: performant in silico saturation mutagenesis for convolutional neural networks 2022 ·Bioinformatics ·Surag Nair,Avanti Shrikumar,Jacob Schreiber,Anshul Kundaje	14
3	Domain-adaptive neural networks improve cross-species prediction of transcription factor binding 2022 ·Genome Research ·Kelly Cochran,Divyanshi Srivastava,Avanti Shrikumar,Akshay Balsubramani,Ross C. Hardison,Anshul Kundaje,Shaun Mahony	19
4	Short tandem repeats recruit transcription factors to tune eukaryotic gene expression 2022 ·Biophysical Journal ·(unknown),Amr M. Alexandari,Michael G.B. Hayes,Julia M. Schaepe,Emil Marklund,Nilay Shah,Arjun K. Aditham,Avanti Shrikumar,Ariel Afek,William J. Greenleaf,Raluca Gordân,Julia Zeitlinger,Anshul Kundaje,Polly M. Fordyce	1
5	Controls on barium and radium-226 distributions along GEOTRACES GP15 2021 ·Goldschmidt2021 abstracts ·Emilie Le Roy,Matthew A. Charette,Paul B. Henderson,Tristan J. Horner,Alan M. Shiller,Willard S. Moore,Karen L. Casciotti,Pieter van Beek,Marc Souhaut,Maureen Auro,(unknown),Avanti Shrikumar	1
6	Base-resolution models of transcription-factor binding reveal soft motif syntaxbreakdown → 2021 ·Nature Genetics ·Žiga Avsec,Melanie Weilert,Avanti Shrikumar,Sabrina Krueger,Amr M. Alexandari,Khyati Dalal,Robin Fropf,Charles E. McAnany,Julien Gagneur,Anshul Kundaje,Julia Zeitlinger	294
7	Fourier-transform-based attribution priors improve the interpretability and stability of deep learning models for genomics 2020 ·Neural Information Processing Systems ·Alex M. Tseng,Avanti Shrikumar,Anshul Kundaje	2
8	GkmExplain: fast and accurate interpretation of nonlinear gapped k -mer SVMs 2019 ·Bioinformatics ·Avanti Shrikumar,(unknown),Anshul Kundaje	30
9	Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays 2019 ·PLoS ONE ·(unknown),Peyton Greenside,Georgi K. Marinov,Surag Nair,Avanti Shrikumar,Anshul Kundaje	59
10	Calibration with Bias-Corrected Temperature Scaling Improves Domain Adaptation Under Label Shift in Modern Neural Networks. 2019 ·Avanti Shrikumar,Anshul Kundaje	2
11	TF-MoDISco v0.4.2.2-alpha: Technical Note 2018 ·arXiv (Cornell University) ·Avanti Shrikumar,Katherine Tian,Anna Shcherbina,Žiga Avsec,Abhimanyu Banerjee,Mahfuza Sharmin,Surag Nair,Anshul Kundaje	8
12	Transcriptional Reversion of Cardiac Myocyte Fate During Mammalian Cardiac Regeneration 2014 ·Circulation Research ·Caitlin C. O’Meara,Joseph A. Wamstad,Rachel A. Gladstone,Gregory M. Fomovsky,Vincent L. Butty,Avanti Shrikumar,Joseph Gannon,Laurie A. Boyer,Richard Lee	119
13	Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineagebreakdown → 2012 ·Cell ·Joseph A. Wamstad,J M Alexander,Rebecca Truty,Avanti Shrikumar,Fugen Li,Kirsten Eilertson,Huiming Ding,John N. Wylie,Alexander R. Pico,John A. Capra,(unknown),Steven Kattman,Gordon Keller,Deepak Srivastava,Stuart S. Levine,Katherine S. Pollard,Alisha K. Holloway,Laurie A. Boyer,Benoit G. Bruneau	462

About Avanti Shrikumar

Avanti Shrikumar is a scholar working on Cancer Research, Molecular Biology and Environmental Chemistry, having authored 13 papers that have together received 1.1k indexed citations. Recurring topics across this work include Genomics and Chromatin Dynamics (8 papers), RNA Research and Splicing (5 papers) and RNA and protein synthesis mechanisms (5 papers). The work is most often cited by research in Molecular Biology (1.0k citations), Cancer Research (122 citations) and Genetics (181 citations). Avanti Shrikumar has collaborated with scholars based in United States, Hungary and United Kingdom. Frequent co-authors include Anshul Kundaje, Joseph A. Wamstad, Laurie A. Boyer, Amr M. Alexandari, Julia Zeitlinger, Žiga Avsec, Julien Gagneur, Robin Fropf, Sabrina Krueger and Khyati Dalal. Their work appears in journals such as Science, Cell and Nature Genetics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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