Ariane Nunes‐Alves

1.3k total citations · 1 hit paper
27 papers, 724 citations indexed

About

Ariane Nunes‐Alves is a scholar working on Molecular Biology, Computational Theory and Mathematics and Public Health, Environmental and Occupational Health. According to data from OpenAlex, Ariane Nunes‐Alves has authored 27 papers receiving a total of 724 indexed citations (citations by other indexed papers that have themselves been cited), including 19 papers in Molecular Biology, 7 papers in Computational Theory and Mathematics and 4 papers in Public Health, Environmental and Occupational Health. Recurrent topics in Ariane Nunes‐Alves's work include Protein Structure and Dynamics (12 papers), Computational Drug Discovery Methods (7 papers) and Protein purification and stability (2 papers). Ariane Nunes‐Alves is often cited by papers focused on Protein Structure and Dynamics (12 papers), Computational Drug Discovery Methods (7 papers) and Protein purification and stability (2 papers). Ariane Nunes‐Alves collaborates with scholars based in Germany, Brazil and United States. Ariane Nunes‐Alves's co-authors include Rebecca C. Wade, Guilherme M. Arantes, Daria B. Kokh, Outi M. H. Salo‐Ahen, Muhammad Usman Mirza, Atefeh Saadabadi, Rodrigo V. Honorato, Ghulam Mustafa, Alexandre M. J. J. Bonvin and Tatu Pantsar and has published in prestigious journals such as Nature Communications, Journal of Molecular Biology and Trends in Biochemical Sciences.

In The Last Decade

Ariane Nunes‐Alves

24 papers receiving 713 citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development

2020 372 citations Outi M. H. Salo‐Ahen, Rajendra Bhadane et al. Processes profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Ariane Nunes‐Alves Germany	12	416	222	106	79	47	27	724
Zhuo Yang China	18	630 1.5×	162 0.7×	101 1.0×	190 2.4×	51 1.1×	43	1.4k
Benjamin P. Cossins United Kingdom	18	548 1.3×	195 0.9×	145 1.4×	54 0.7×	58 1.2×	30	943
Aleksei Kabedev Sweden	9	235 0.6×	167 0.8×	95 0.9×	97 1.2×	65 1.4×	17	586
Aravindhan Ganesan Canada	15	433 1.0×	217 1.0×	103 1.0×	205 2.6×	66 1.4×	41	930
Ruxi Qi China	16	783 1.9×	211 1.0×	155 1.5×	159 2.0×	62 1.3×	34	1.2k
Zdeněk Křı́ž Czechia	16	369 0.9×	138 0.6×	117 1.1×	132 1.7×	69 1.5×	69	781
Antonija Kuzmanic United Kingdom	11	601 1.4×	190 0.9×	188 1.8×	88 1.1×	57 1.2×	12	844
Marta A. S. Perez Switzerland	14	445 1.1×	146 0.7×	74 0.7×	124 1.6×	132 2.8×	28	953
Maria I. Zavodszky United States	14	522 1.3×	214 1.0×	141 1.3×	72 0.9×	37 0.8×	26	760

Countries citing papers authored by Ariane Nunes‐Alves

Since Specialization

Citations

This map shows the geographic impact of Ariane Nunes‐Alves's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ariane Nunes‐Alves with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ariane Nunes‐Alves more than expected).

Fields of papers citing papers by Ariane Nunes‐Alves

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ariane Nunes‐Alves. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ariane Nunes‐Alves. The network helps show where Ariane Nunes‐Alves may publish in the future.

Co-authorship network of co-authors of Ariane Nunes‐Alves

This figure shows the co-authorship network connecting the top 25 collaborators of Ariane Nunes‐Alves. A scholar is included among the top collaborators of Ariane Nunes‐Alves based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Ariane Nunes‐Alves. Ariane Nunes‐Alves is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Nunes‐Alves, Ariane, et al.. (2025). PathInHydro, a Set of Machine Learning Models to Identify Unbinding Pathways of Gas Molecules in [NiFe] Hydrogenases. Journal of Chemical Information and Modeling. 65(2). 589–602.

Kokh, Daria B., et al.. (2024). Computational screening of the effects of mutations on protein-protein off-rates and dissociation mechanisms by τRAMD. Communications Biology. 7(1). 1159–1159. 5 indexed citations

Nunes‐Alves, Ariane, et al.. (2024). Characterization of the Bottlenecks and Pathways for Inhibitor Dissociation from [NiFe] Hydrogenase. Journal of Chemical Information and Modeling. 64(10). 4193–4203. 2 indexed citations

Ghosh, Rikhia, et al.. (2024). Recent Progress in Modeling and Simulation of Biomolecular Crowding and Condensation Inside Cells. Journal of Chemical Information and Modeling. 64(24). 9063–9081. 3 indexed citations

Berger, F G, et al.. (2023). pH-dependence of the Plasmodium falciparum chloroquine resistance transporter is linked to the transport cycle. Nature Communications. 14(1). 4234–4234. 5 indexed citations

Silva, Thamara Nishida Xavier da, Clemens Schulte, Ariane Nunes‐Alves, Hans Michael Maric, & José Pedro Friedmann Angeli. (2023). Molecular characterization of AIFM2/FSP1 inhibition by iFSP1-like molecules. Cell Death and Disease. 14(4). 281–281. 37 indexed citations

Nunes‐Alves, Ariane, et al.. (2022). Advances in computational methods for ligand binding kinetics. Trends in Biochemical Sciences. 48(5). 437–449. 33 indexed citations

Nunes‐Alves, Ariane, et al.. (2022). Diffusion of small molecule drugs is affected by surface interactions and crowder proteins. iScience. 25(10). 105088–105088. 13 indexed citations

Nunes‐Alves, Ariane, et al.. (2022). The Non-phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase GapN Is a Potential New Drug Target in Streptococcus pyogenes. Frontiers in Microbiology. 13. 802427–802427. 3 indexed citations

10.

Nunes‐Alves, Ariane, et al.. (2021). A Protocol to Use Comparative Binding Energy Analysis to Estimate Drug-Target Residence Time. Methods in molecular biology. 2266. 171–186. 2 indexed citations

11.

Marciano, Shir, et al.. (2021). Line-FRAP, A Versatile Method to Measure Diffusion Rates In Vitro and In Vivo. Journal of Molecular Biology. 433(9). 166898–166898. 14 indexed citations

12.

Berger, Benedict‐Tilman, Marta Amaral, Daria B. Kokh, et al.. (2021). Structure-kinetic relationship reveals the mechanism of selectivity of FAK inhibitors over PYK2. Cell chemical biology. 28(5). 686–698.e7. 50 indexed citations

13.

Salo‐Ahen, Outi M. H., Rajendra Bhadane, Alexandre M. J. J. Bonvin, et al.. (2020). Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development. Processes. 9(1). 71–71. 372 indexed citations breakdown →

14.

Mazzolari, Angelica, Ariane Nunes‐Alves, Habibah A. Wahab, et al.. (2020). Impact of the Journal of Chemical Information and Modeling Special Issue on Women in Computational Chemistry. Journal of Chemical Information and Modeling. 60(7). 3328–3330. 2 indexed citations

15.

Gutting, Tobias, Johannes Betge, Christoph Röcken, et al.. (2020). Myotubularin-related protein 7 activates peroxisome proliferator-activated receptor-gamma. Oncogenesis. 9(6). 59–59. 9 indexed citations

16.

Nunes‐Alves, Ariane, Daria B. Kokh, & Rebecca C. Wade. (2020). Recent progress in molecular simulation methods for drug binding kinetics. Current Opinion in Structural Biology. 64. 126–133. 56 indexed citations

17.

Nunes‐Alves, Ariane, Angelica Mazzolari, & Kenneth M. Merz. (2020). What Makes a Paper Be Highly Cited? 60 Years of the Journal of Chemical Information and Modeling. Journal of Chemical Information and Modeling. 60(12). 5866–5867. 2 indexed citations

18.

Nunes‐Alves, Ariane. (2019). From Brazil to Germany: Challenges and Advantages. Journal of Chemical Information and Modeling. 60(2). 449–451.

19.

Nunes‐Alves, Ariane, Daniel M. Zuckerman, & Guilherme M. Arantes. (2018). Escape of a Small Molecule from Inside T4 Lysozyme by Multiple Pathways. Biophysical Journal. 114(5). 1058–1066. 46 indexed citations

20.

Nunes‐Alves, Ariane, Arthur A. Nery, & Henning Ulrich. (2012). Tobacco Nitrosamine N-nitrosonornicotine as Inhibitor of Neuronal Nicotinic Acetylcholine Receptors. Journal of Molecular Neuroscience. 49(1). 52–61. 5 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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