A.R. Ferré-D′Amaré

14.2k citations

144 papers · 10.5k indexed · 2 hit papers · h-index 58

Impact in

Molecular Biology top 0.5%
- RNA and protein synthesis mechanisms
- RNA modifications and cancer
- RNA Research and Splicing
- DNA and Nucleic Acid Chemistry
- Advanced biosensing and bioanalysis techniques
Genetics top 1%
- Bacterial Genetics and Biotechnology

Papers in

Molecular Biology 140
- RNA and protein synthesis mechanisms 131
- RNA modifications and cancer 87
- RNA Research and Splicing 47
- DNA and Nucleic Acid Chemistry 29
- Advanced biosensing and bioanalysis techniques 17
Genetics 18
- Bacterial Genetics and Biotechnology 18

Co-authors: Jennifer A. Doudna S.K. Burley Tomoko Hamma Daniel J. Klein Jinwei Zhang Peter B. Rupert Thomas E. Edwards Kaihong Zhou
Journals: RNA (13 papers)Structure (8 papers)Nature (8 papers)Nature Communications (6 papers)Nucleic Acids Research (6 papers)
Partner nations: United States United Kingdom Canada

In The Last Decade

A.R. Ferré-D′Amaré

140 papers receiving 10.4k citations

Hit Papers

align trajectories log scale

Crystal structure of a hepatitis delta virus ribozyme 1998 · 596 citations

Peers

Countries citing papers authored by A.R. Ferré-D′Amaré

Since Specialization

Citations

This map shows the geographic impact of A.R. Ferré-D′Amaré's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by A.R. Ferré-D′Amaré with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites A.R. Ferré-D′Amaré more than expected).

Fields of papers citing papers by A.R. Ferré-D′Amaré

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by A.R. Ferré-D′Amaré. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by A.R. Ferré-D′Amaré. The network helps show where A.R. Ferré-D′Amaré may publish in the future.

Co-authorship network

The 25 scholars most cited alongside A.R. Ferré-D′Amaré, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with A.R. Ferré-D′Amaré Line = papers co-authored together A.R. Ferré-D′Amaré links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Structure-informed design of an ultrabright RNA-activated fluorophore Nature Chemistry ·Mo Yang, M Tonosaki, J. W. Moore, Caterina Ceccarelli, W. Uebel, Maria Grazia Veratelli, Kevin M. Weeks, A.R. Ferré-D′Amaré, John S. Schneekloth	2025	1
2	Crystallographic and cryoEM analyses reveal SARS-CoV-2 SL5 is a mobile T-shaped four-way junction with deep pockets RNA ·Christopher P. Jones, A.R. Ferré-D′Amaré	2025	1
3	Symmetry breaking of fluorophore binding to a G-quadruplex generates an RNA aptamer with picomolar KD Nucleic Acids Research ·María Alejandra Castro Castañeda, J. W. Moore, Matthew B. Nodwell, Abdallah Ougazzaden, А. В. Говоров, Elena V. Dolgosheina, A.R. Ferré-D′Amaré, Robert Britton, Peter J. Unrau	2024	3
4	RNA thermometers are widespread upstream of ABC transporter genes in bacteria Journal of Biological Chemistry ·Akash Ambashankar, Ljiljana GvozdenoviÄ, Doumit Semaan, F. Britton, Isabel del Campo Hernández, A.R. Ferré-D′Amaré, J. W. Moore, محبوبه نبیزاده نُقندر	2024	1
5	Investigating the NRAS 5′ UTR as a target for small molecules Cell chemical biology ·Caterina Ceccarelli, V. G. Gajnutdinov, David Calabrese, Victor A. Shurygin, L.I. McClymont, Liang Xiao, W. Uebel, 康太松田, Ronald J. Holewinski, Þorkell Andrésson, A.R. Ferré-D′Amaré, Danny Incarnato, John S. Schneekloth	2023	21
6	Discovery of Small Molecules Targeting the Frameshifting Element RNA in SARS-CoV-2 Viral Genome ACS Medicinal Chemistry Letters ·Mo Yang, J Vaičiulis, Curran A. Rhodes, Caterina Ceccarelli, Ruslan Abduramanov, 康太松田, Xiao Liang, Christopher P. Jones, Stuart F.J. Le Grice, A.R. Ferré-D′Amaré, John S. Schneekloth	2023	14
7	Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot RNA ·Christopher P. Jones, A.R. Ferré-D′Amaré	2021	43
8	Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design Cell chemical biology ·Anne Yagi, Basil Edolikkandy, 沈一鸣, Colleen M. Connelly, Michelle H. Moon, A.R. Ferré-D′Amaré, John S. Schneekloth, Christopher P. Jones	2020	18
9	Synthetic ligands for PreQ1 riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure Nature Communications ·Colleen M. Connelly, Tomoyuki Numata, Robert E. Boer, Michelle H. Moon, В. В. Лихенко, Joseph J. Barchi, A.R. Ferré-D′Amaré, John S. Schneekloth	2019	67
10	Protein and RNA dynamical fingerprinting Nature Communications ·Katherine A. Niessen, Mengyang Xu, Deepu George, Michael C. Chen, A.R. Ferré-D′Amaré, Edward H. Snell, Vivian Cody, 比嘉直子, Marius Schmidt, Andrea Markelz	2019	82
11	The tRNA Elbow in Structure, Recognition and Evolution Life ·Jinwei Zhang, A.R. Ferré-D′Amaré	2016	73
12	Trying on tRNA for Size: RNase P and the T-box Riboswitch as Molecular Rulers Biomolecules ·Jinwei Zhang, A.R. Ferré-D′Amaré	2016	18
13	Validating Fragment-Based Drug Discovery for Biological RNAs: Lead Fragments Bind and Remodel the TPP Riboswitch Specifically Chemistry & Biology ·K.D. Warner, Philip Homan, Kevin M. Weeks, Alison G. Smith, Chris Abell, A.R. Ferré-D′Amaré	2014	72
14	Global analysis of riboswitches by small-angle X-ray scattering and calorimetry Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms ·Jinwei Zhang, Christopher P. Jones, A.R. Ferré-D′Amaré	2014	34
15	Analysis of Riboswitch Structure and Ligand Binding Using Small-Angle X-ray Scattering (SAXS) Methods in molecular biology ·Nathan Baird, A.R. Ferré-D′Amaré	2013	8
16	Modulation of quaternary structure and enhancement of ligand binding by the K-turn of tandem glycine riboswitches RNA ·Nathan Baird, A.R. Ferré-D′Amaré	2012	37
17	Essential Role of an Active-Site Guanine in glmS Ribozyme Catalysis Journal of the American Chemical Society ·Daniel J. Klein, Michael D. Been, A.R. Ferré-D′Amaré	2007	73
18	Structural Basis of glmS Ribozyme Activation by Glucosamine-6-Phosphate Science ·Daniel J. Klein, A.R. Ferré-D′Amaré	2006	299
19	Crystallization of the Hairpin Ribozyme: Illustrative Protocols Humana Press eBooks ·Peter B. Rupert, A.R. Ferré-D′Amaré	2004	19
20	A novel ARH splice site mutation in a Mexican kindred with autosomal recessive hypercholesterolemia Human Genetics ·Samuel Canizales‐Quinteros, Carlos A. Aguilar‐Salinas, Adriana Huertas‐Vázquez, María Luisa Ordóñez-Sánchez, M. Rodríguez‐Torres, Deniz Taşkın, Laura Riba, Salvador Ramı́rez-Jiménez, E. Yu. Garbuzov, Tatiane Martins Jorge, Ludivina Robles‐Osorio, Ángel Miliar-García, Karen Danielle Oliveira, Blanca H. Ruíz-Ordaz, Alejandro Zentella‐Dehesa, A.R. Ferré-D′Amaré, Francisco J. Gómez‐Pérez, Daniel Fonseca Segura	2004	15

About A.R. Ferré-D′Amaré

A.R. Ferré-D′Amaré is a scholar working on Molecular Biology, Genetics, Ecology, Hepatology and Materials Chemistry, having authored 144 papers that have together received 10.5k indexed citations. Recurring topics across this work include RNA and protein synthesis mechanisms (131 papers), RNA modifications and cancer (87 papers), RNA Research and Splicing (47 papers), DNA and Nucleic Acid Chemistry (29 papers), Bacterial Genetics and Biotechnology (18 papers), Advanced biosensing and bioanalysis techniques (17 papers), Bacteriophages and microbial interactions (14 papers) and Enzyme Structure and Function (9 papers). The work is most often cited by research in Molecular Biology (9.7k citations), Genetics (1.3k citations), Hepatology (252 citations), Cell Biology (475 citations) and Ecology (671 citations). A.R. Ferré-D′Amaré has collaborated with scholars based in United States, United Kingdom and Canada. Frequent co-authors include Jennifer A. Doudna, S.K. Burley, Tomoko Hamma, Daniel J. Klein, Jinwei Zhang, Peter B. Rupert, Thomas E. Edwards, Kaihong Zhou, Nathan Baird and George C. Prendergast. Their work appears in journals such as RNA, Structure, Nature, Nature Communications and Nucleic Acids Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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