Standout Papers

Slingshot: cell lineage and pseudotime inference for sin... 2012 2026 2016 2021 1.4k
  1. Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics (2018)
    Kelly Street, Davide Risso et al. BMC Genomics
  2. Sodium chloride drives autoimmune disease by the induction of pathogenic TH17 cells (2013)
    Markus Kleinewietfeld, Arndt Manzel et al. Nature
  3. Deep generative modeling for single-cell transcriptomics (2018)
    Romain Lopez, Jeffrey Regier et al. Nature Methods
  4. Induction and molecular signature of pathogenic TH17 cells (2012)
    Youjin Lee, Amit Awasthi et al. Nature Immunology
  5. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells (2013)
    Alex K. Shalek, Rahul Satija et al. Nature
  6. Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1 (2013)
    Chuan Wu, Nir Yosef et al. Nature
  7. The epigenetic landscape of T cell exhaustion (2016)
    Debattama R. Sen, James J. Kaminski et al. Science
  8. Revealing the vectors of cellular identity with single-cell genomics (2016)
    Allon Wagner, Aviv Regev et al. Nature Biotechnology
  9. Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis (2020)
    David Schafflick, Chenling Xu et al. Nature Communications
  10. Joint probabilistic modeling of single-cell multi-omic data with totalVI (2021)
    Adam Gayoso, Zoë Steier et al. Nature Methods
  11. Mapping single-cell data to reference atlases by transfer learning (2021)
    Mohammad Lotfollahi, Mohsen Naghipourfar et al. Nature Biotechnology
  12. Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models (2021)
    Chenling Xu, Romain Lopez et al. Molecular Systems Biology
  13. MultiVI: deep generative model for the integration of multimodal data (2023)
    Tal Ashuach, Mariano I. Gabitto et al. Nature Methods

Immediate Impact

1 by Nobel laureates 83 from Science/Nature 246 standout
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Citing Papers

A foundation model of transcription across human cell types
2025 StandoutNature
A comprehensive spatio-cellular map of the human hypothalamus
2025 StandoutNature

Works of Nir Yosef being referenced

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements
2020
Deep generative modeling for single-cell transcriptomics
2018 Standout

Author Peers

Author Last Decade Papers Cites
Nir Yosef 7452 4393 1569 114 12.8k
Michael Boutros 13832 2551 2349 216 18.6k
Lai Guan Ng 5264 7048 736 108 16.4k
Dieter E. Jenne 4957 4659 1482 130 12.8k
Richard M. Siegel 6053 7142 1150 169 13.5k
Norma Neff 8853 1603 1837 92 13.0k
Evan W. Newell 4340 5408 685 147 10.8k
Philippe P. Roux 10282 1889 1421 101 15.1k
W. Evan Johnson 8683 1528 2393 123 14.0k
David A. Guertin 14558 2213 2114 62 20.7k
Berthold Göttgens 12923 4034 1639 294 18.1k

All Works

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2026