Standout Papers

Differential gene and transcript expression analysis of RNA-seq experiments wit... 2009 2026 2014 2020 9.0k
  1. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks (2012)
    Cole Trapnell, Adam Roberts et al. Nature Protocols
  2. A whole-genome assembly of the domestic cow, Bos taurus (2009)
    Aleksey V. Zimin, Arthur L. Delcher et al. Genome biology
  3. Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks (2016)
    David R. Kelley, Jasper Snoek et al. Genome Research
  4. Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre (2014)
    Ezgi Hacisuleyman, Loyal A. Goff et al. Nature Structural & Molecular Biology
  5. Effective gene expression prediction from sequence by integrating long-range interactions (2021)
    Žiga Avsec, Vikram Agarwal et al. Nature Methods
  6. Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation (2025)
    Johannes Linder, Divyanshi Srivastava et al. Nature Genetics

Immediate Impact

1 by Nobel laureates 31 from Science/Nature 61 standout
Sub-graph 1 of 24

Citing Papers

A foundation model of transcription across human cell types
2025 StandoutNature
Sequence modeling and design from molecular to genome scale with Evo
2024 StandoutScience
3 intermediate papers

Works of David R. Kelley being referenced

Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks
2016 Standout
and 1 more

Author Peers

Author Last Decade Papers Cites
David R. Kelley 9735 2960 624 3247 43 14.6k
Adam Roberts 8565 2034 394 3296 18 13.3k
Alicia Oshlack 11481 2730 541 3088 95 18.1k
Loyal A. Goff 13042 6144 524 3361 76 18.9k
Marijke J. van Baren 8891 2338 293 3281 18 14.4k
Filip Pattyn 10190 2358 955 2354 41 18.2k
W. James Kent 16549 2933 402 4242 31 21.0k
Mihaela Pertea 11450 2470 332 6294 43 18.8k
Colin N. Dewey 10724 2294 422 4135 49 18.6k
Bo Li 9616 2251 450 3632 65 17.1k
Bruce Poppe 10300 2528 918 2353 82 18.8k

All Works

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2026