Yu Xue

25.3k total citations · 5 hit papers
201 papers, 11.1k citations indexed

About

Yu Xue is a scholar working on Molecular Biology, Spectroscopy and Oncology. According to data from OpenAlex, Yu Xue has authored 201 papers receiving a total of 11.1k indexed citations (citations by other indexed papers that have themselves been cited), including 139 papers in Molecular Biology, 25 papers in Spectroscopy and 24 papers in Oncology. Recurrent topics in Yu Xue's work include Machine Learning in Bioinformatics (32 papers), Ubiquitin and proteasome pathways (26 papers) and Genomics and Phylogenetic Studies (25 papers). Yu Xue is often cited by papers focused on Machine Learning in Bioinformatics (32 papers), Ubiquitin and proteasome pathways (26 papers) and Genomics and Phylogenetic Studies (25 papers). Yu Xue collaborates with scholars based in China, United States and Hong Kong. Yu Xue's co-authors include Xuebiao Yao, Jian Ren, Zexian Liu, Wankun Deng, Xinjiao Gao, Yongbo Wang, Han Cheng, Longping Wen, Changjiang Jin and Fengfeng Zhou and has published in prestigious journals such as Nucleic Acids Research, Journal of Biological Chemistry and Nature Communications.

In The Last Decade

Yu Xue

192 papers receiving 11.0k citations

Hit Papers

5 papers align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

HemI: A Toolkit for Illustrating Heatmaps

2014 863 citations Wankun Deng, Zexian Liu et al. profile →
IBS: an illustrator for the presentation and visualization of biological sequences

2015 733 citations Wenzhong Liu, Yubin Xie et al. profile →
GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

2008 543 citations Yu Xue, Jian Ren et al. profile →
Inhibiting PD-L1 palmitoylation enhances T-cell immune responses against tumours

2019 403 citations Yu Xue et al. Nature Biomedical Engineering profile →
AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations

2022 145 citations Miaomiao Chen, Yu Xue et al. Nucleic Acids Research profile →

Peers

Countries citing papers authored by Yu Xue

Since Specialization

Citations

This map shows the geographic impact of Yu Xue's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Yu Xue with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Yu Xue more than expected).

Fields of papers citing papers by Yu Xue

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Yu Xue. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Yu Xue. The network helps show where Yu Xue may publish in the future.

Co-authorship network of co-authors of Yu Xue

This figure shows the co-authorship network connecting the top 25 collaborators of Yu Xue. A scholar is included among the top collaborators of Yu Xue based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Yu Xue. Yu Xue is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

#	Work	Indexed citations
1	Molecular Epidemiological Characteristics of blaIMP-4-Carrying Klebsiella pneumoniae ST-11 in Hospitalized Patients 2025 ·Infection and Drug Resistance ·Yu Xue, Dongmei Zhang, (unknown), Du Chen, Shihan Liu, (unknown), Chong Li, Jianchu Zhang, Xiaorong Wang	1
2	Predicting bearing capacity of angle steel bolted connections using machine learning based on experimental and numerical database 2024 ·Structures ·Xiongyan Li, (unknown), Yu Xue, Suduo Xue, (unknown), Yang Zhou	4
3	GPSD: a hybrid learning framework for the prediction of phosphatase-specific dephosphorylation sites 2024 ·Briefings in Bioinformatics ·Han Cheng, Shanshan Fu, Miaomiao Chen, Yujie Gou, (unknown), Chi Zhang, Xinhe Huang, Leming Xiao, Miaoying Zhao, (unknown), (unknown), Di Peng, Yu Xue	0
4	PTMD 2.0: an updated database of disease-associated post-translational modifications 2024 ·Nucleic Acids Research ·Xinhe Huang, (unknown), Dan Liu, Yujie Gou, (unknown), Dachao Tang, Han Cheng, (unknown), Di Peng, Yu Xue	7
5	GPS-SUMO 2.0: an updated online service for the prediction of SUMOylation sites and SUMO-interacting motifs 2024 ·Nucleic Acids Research ·Yujie Gou, Dan Liu, Miaomiao Chen, Yuxiang Wei, Xinhe Huang, Han Cheng, (unknown), Chi Zhang, (unknown), Di Peng, Yu Xue	13
6	GPS-pPLM: A Language Model for Prediction of Prokaryotic Phosphorylation Sites 2024 ·Cells ·(unknown), Dachao Tang, (unknown), Yujie Gou, Miaomiao Chen, Xinhe Huang, (unknown), Miaoying Zhao, Leming Xiao, (unknown), Di Peng, Yu Xue	1
7	Palladium‐Catalyzed [4+2] and [6+2] Dipolar Cycloadditions for the Construction of Benzo[d]isothiazole 1,1‐Dioxide Fused 1,3‐Oxazinanes and 1,3‐Oxazocanes^† 2023 ·Chinese Journal of Chemistry ·Lei Chen, (unknown), Yu Xue, Zhengyu Han, Jianwei Sun, Hai Huang	12
8	Multi-omics characterization of autophagy-related molecular features for therapeutic targeting of autophagy 2022 ·Nature Communications ·Mei Luo, Lin Ye, Ruimin Chang, Youqiong Ye, Zhao Zhang, Chunjie Liu, Shengli Li, Ying Jing, Hang Ruan, Guanxiong Zhang, Yi He, Yaoming Liu, Yu Xue, Xiang Chen, An‐Yuan Guo, Hong Liu, Leng Han	17
9	PIM1 promotes hepatic conversion by suppressing reprogramming-induced ferroptosis and cell cycle arrest 2022 ·Nature Communications ·(unknown), Chenwei Wang, Xuran Zhuang, Shaofeng Lin, Miaomiao Luo, Wankun Deng, Jiaqi Zhou, Lihui Liu, Lina Mao, Wenbo Peng, Jian Chen, Qiangsong Wang, Yilai Shu, Yu Xue, Pengyu Huang	11
10	iPCD: A Comprehensive Data Resource of Regulatory Proteins in Programmed Cell Death 2022 ·Cells ·Dachao Tang, (unknown), Shaofeng Lin, Xiaodan Tan, Weizhi Zhang, Di Peng, Chenwei Wang, Yu Xue	3
11	Atg9-centered multi-omics integration reveals new autophagy regulators inSaccharomyces cerevisiae 2021 ·Autophagy ·Di Peng, Chen Ruan, Shanshan Fu, (unknown), (unknown), (unknown), (unknown), Dachao Tang, Lan Yao, Shaofeng Lin, Ying Shi, Weizhi Zhang, Hao Zhou, Le Zhu, Cong Ma, Cheng Chang, Jie Ma, Zhiping Xie, Chenwei Wang, Yu Xue	7
12	Phosphorylation of SNX27 by MAPK11/14 links cellular stress–signaling pathways with endocytic recycling 2021 ·The Journal of Cell Biology ·(unknown), Chenyi Liao, Jiao Qin, Yanqiu Gong, (unknown), Shasha Li, (unknown), (unknown), Wankun Deng, Qingxiang Sun, Xianming Mo, Yu Xue, Daniel D. Billadeau, Lunzhi Dai, Guohui Li, Da Jia	28
13	An integrative multi-omics approach uncovers the regulatory role of CDK7 and CDK4 in autophagy activation induced by silica nanoparticles 2020 ·Autophagy ·Chen Ruan, Chenwei Wang, Xuanqing Gong, Ying Zhang, Wankun Deng, Jiaqi Zhou, Dengtong Huang, Zining Wang, Qiong Zhang, An‐Yuan Guo, Jiahong Lu, Jinhao Gao, Di Peng, Yu Xue	40
14	HybridSucc: A Hybrid-Learning Architecture for General and Species-Specific Succinylation Site Prediction 2020 ·Genomics Proteomics & Bioinformatics ·Wanshan Ning, Haodong Xu, Peiran Jiang, Han Cheng, Wankun Deng, Yaping Guo, Yu Xue	34
15	Open resource of clinical data from patients with pneumonia for the prediction of COVID-19 outcomes via deep learning 2020 ·Nature Biomedical Engineering ·Wanshan Ning, Shijun Lei, Jingjing Yang, Yukun Cao, Peiran Jiang, Qianqian Yang, Jiao Zhang, Xiaobei Wang, Fenghua Chen, Zhi Geng, Liang Xiong, Hongmei Zhou, Yaping Guo, Yulan Zeng, Heshui Shi, Lin Wang, Yu Xue, Zheng Wang	131
16	DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae 2019 ·Autophagy ·Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, (unknown), Yaping Guo, (unknown), Cong Yi, Jian Ren, Yu Xue	17
17	DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning 2018 ·Genomics Proteomics & Bioinformatics ·Yubin Xie, Xiaotong Luo, (unknown), (unknown), Wenbin Ma, Junjiu Huang, Jun Cui, Yong Zhao, Yu Xue, Zhixiang Zuo, Jian Ren	78
18	GPS-PUP: computational prediction of pupylation sites in prokaryotic proteins 2011 ·Molecular BioSystems ·Zexian Liu, Qian Ma, Jun Cao, Xinjiao Gao, Jian Ren, Yu Xue	34
19	GPS-YNO2: computational prediction of tyrosinenitration sites in proteins 2011 ·Molecular BioSystems ·Zexian Liu, Jun Cao, Qian Ma, Xinjiao Gao, Jian Ren, Yu Xue	78
20	Analysis on affecting factors of primary dysmenorrhea in adolescent girls 2003 ·Zhonghua xingwei yixue yu naokexue zazhi ·Yu Xue	0

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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