Yosuke Nishimura

2.4k total citations · 2 hit papers
31 papers, 1.4k citations indexed

About

Yosuke Nishimura is a scholar working on Ecology, Molecular Biology and Plant Science. According to data from OpenAlex, Yosuke Nishimura has authored 31 papers receiving a total of 1.4k indexed citations (citations by other indexed papers that have themselves been cited), including 16 papers in Ecology, 13 papers in Molecular Biology and 9 papers in Plant Science. Recurrent topics in Yosuke Nishimura's work include Bacteriophages and microbial interactions (13 papers), Genomics and Phylogenetic Studies (7 papers) and Plant Virus Research Studies (7 papers). Yosuke Nishimura is often cited by papers focused on Bacteriophages and microbial interactions (13 papers), Genomics and Phylogenetic Studies (7 papers) and Plant Virus Research Studies (7 papers). Yosuke Nishimura collaborates with scholars based in Japan, United States and France. Yosuke Nishimura's co-authors include Hiroyuki Ogata, Susumu Goto, Takashi Yoshida, Tomoko Mihara, Pascal Hingamp, Susumu Yoshizawa, Hiroki Nishiyama, Yugo Shimizu, Genki Yoshikawa and Yoshihiro Yamanishi and has published in prestigious journals such as SHILAP Revista de lepidopterología, Bioinformatics and Applied and Environmental Microbiology.

In The Last Decade

Yosuke Nishimura

28 papers receiving 1.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

ViPTree: the viral proteomic tree server

2017 548 citations Yosuke Nishimura, Takashi Yoshida et al. Bioinformatics profile →
Linking Virus Genomes with Host Taxonomy

2016 274 citations Tomoko Mihara, Yosuke Nishimura et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Yosuke Nishimura Japan	15	1.0k	718	305	192	140	31	1.4k
Sivakumar Kannan United States	9	398 0.4×	1.1k 1.5×	304 1.0×	61 0.3×	81 0.6×	16	1.7k
Hila Sberro Israel	11	840 0.8×	1.4k 1.9×	213 0.7×	159 0.8×	129 0.9×	11	1.8k
Xianglilan Zhang China	15	388 0.4×	662 0.9×	85 0.3×	177 0.9×	135 1.0×	54	1.2k
Henry H. Lee United States	9	378 0.4×	1.0k 1.4×	79 0.3×	79 0.4×	108 0.8×	9	1.5k
Marcus Lechner Germany	15	406 0.4×	974 1.4×	271 0.9×	44 0.2×	80 0.6×	32	1.4k
Richard McVeigh United States	7	347 0.3×	912 1.3×	224 0.7×	43 0.2×	48 0.3×	8	1.4k
Konstantinos Liolios United States	14	475 0.5×	1.3k 1.9×	405 1.3×	27 0.1×	44 0.3×	22	2.2k
François Enault France	18	2.2k 2.2×	1.3k 1.9×	787 2.6×	275 1.4×	304 2.2×	34	2.7k
Juraj Michálik Czechia	8	387 0.4×	774 1.1×	143 0.5×	70 0.4×	150 1.1×	11	1.2k
Daniel C. Richter Germany	6	357 0.3×	1.0k 1.4×	346 1.1×	41 0.2×	49 0.3×	7	1.6k

Countries citing papers authored by Yosuke Nishimura

Since Specialization

Citations

This map shows the geographic impact of Yosuke Nishimura's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Yosuke Nishimura with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Yosuke Nishimura more than expected).

Fields of papers citing papers by Yosuke Nishimura

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Yosuke Nishimura. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Yosuke Nishimura. The network helps show where Yosuke Nishimura may publish in the future.

Co-authorship network of co-authors of Yosuke Nishimura

This figure shows the co-authorship network connecting the top 25 collaborators of Yosuke Nishimura. A scholar is included among the top collaborators of Yosuke Nishimura based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Yosuke Nishimura. Yosuke Nishimura is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Hosaka, Toshiaki, Masumi Hasegawa, Yosuke Nishimura, et al.. (2025). Carotenoids bind rhodopsins and act as photocycle-accelerating pigments in marine Bacteroidota. Nature Microbiology. 10(10). 2603–2615. 4 indexed citations

Nishimura, Yosuke, Kohei Yamada, Yusuke Okazaki, & Hiroyuki Ogata. (2024). DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics. Microbes and Environments. 39(1). n/a–n/a. 22 indexed citations

Urayama, Syun‐ichi, Akihito Fukudome, Miho Hirai, et al.. (2024). Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan. Nature Microbiology. 9(2). 514–523. 17 indexed citations

Hasegawa, Masumi, Toshiaki Hosaka, Keiichi Kojima, et al.. (2024). Cyanorhodopsin-II represents a yellow-absorbing proton-pumping rhodopsin clade within cyanobacteria. The ISME Journal. 18(1). 3 indexed citations

Tominaga, Kento, et al.. (2023). Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis. mSystems. 8(1). e0093122–e0093122. 6 indexed citations

Shiozaki, Takuhei, Yosuke Nishimura, Susumu Yoshizawa, et al.. (2023). Distribution and survival strategies of endemic and cosmopolitan diazotrophs in the Arctic Ocean. The ISME Journal. 17(8). 1340–1350. 10 indexed citations

Kojima, Keiichi, Yosuke Nishimura, Masumi Hasegawa, et al.. (2023). A blue-shifted anion channelrhodopsin from the Colpodellida alga Vitrella brassicaformis. Scientific Reports. 13(1). 6974–6974.

Yoshizawa, Susumu, Keiichi Kojima, Keisuke Inomura, et al.. (2023). Light-driven Proton Pumps as a Potential Regulator for Carbon Fixation in Marine Diatoms. Microbes and Environments. 38(2). n/a–n/a. 7 indexed citations

Hasegawa, Masumi, Toshiaki Hosaka, Keiichi Kojima, et al.. (2020). A unique clade of light-driven proton-pumping rhodopsins evolved in the cyanobacterial lineage. Scientific Reports. 10(1). 16752–16752. 16 indexed citations

10.

Tominaga, Kento, Daichi Morimoto, Yosuke Nishimura, Hiroyuki Ogata, & Takashi Yoshida. (2020). In silico Prediction of Virus-Host Interactions for Marine Bacteroidetes With the Use of Metagenome-Assembled Genomes. Frontiers in Microbiology. 11. 738–738. 18 indexed citations

11.

Okazaki, Yusuke, Yosuke Nishimura, Takashi Yoshida, Hiroyuki Ogata, & Shin‐ichi Nakano. (2019). Genome‐resolved viral and cellular metagenomes revealed potential key virus‐host interactions in a deep freshwater lake. Environmental Microbiology. 21(12). 4740–4754. 38 indexed citations

12.

Yoshida, Takashi, Yosuke Nishimura, Daichi Morimoto, et al.. (2018). Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan. The ISME Journal. 12(5). 1287–1295. 32 indexed citations

13.

Nishimura, Yosuke, Takashi Honda, Tomoko Mihara, et al.. (2017). Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean. mSphere. 2(2). 99 indexed citations

14.

Blanc‐Mathieu, Romain, Tomoko Mihara, Yosuke Nishimura, et al.. (2016). Two asian jumbo phages, ϕRSL2 and ϕRSF1, infect Ralstonia solanacearum and show common features of ϕKZ-related phages. Virology. 494. 56–66. 48 indexed citations

15.

Nishimura, Yosuke, et al.. (2012). HMM Sign Language Recognition Using Kinect and Particle Filter. 111(431). 161–166. 4 indexed citations

16.

Kotera, Masaaki, et al.. (2012). Drug target prediction using adverse event report systems: a pharmacogenomic approach. Bioinformatics. 28(18). i611–i618. 103 indexed citations

17.

Miura, Masao, et al.. (2010). Perception Analysis Of Living Environment At Taman Melati Residential Areas. SHILAP Revista de lepidopterología. 12 indexed citations

18.

Miura, Masao, et al.. (2006). Evaluating the Living Environment in Residential Areas at Taman Melati, Kuala Lumpur. Journal of Asian Architecture and Building Engineering. 5(2). 377–384. 10 indexed citations

19.

Kubota, Tetsu, et al.. (2005). A SUPPORTING METHOD FOR LIVING ENVIRONMENT MEASUREMENTS WITH RESIDENTS' PARTICIPATION : Development of improvement systems for the living environment by a residents' association through preparing the "Living Environment Maps" Part 2. Journal of Environmental Engineering (Transactions of AIJ). 70(593). 95–102.

20.

Suzuki, Hideyuki, Takayuki Okamura, Akimichi Imamura, et al.. (1996). A Case of Empyema Caused by Salmonella Enteritidis in a Patient with Sequela of Pulmonary Tuberculosis. Kansenshogaku zasshi. 70(4). 382–385. 3 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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