Tomasz Żok

2.0k total citations
35 papers, 713 citations indexed

About

Tomasz Żok is a scholar working on Molecular Biology, Computer Networks and Communications and Information Systems and Management. According to data from OpenAlex, Tomasz Żok has authored 35 papers receiving a total of 713 indexed citations (citations by other indexed papers that have themselves been cited), including 28 papers in Molecular Biology, 5 papers in Computer Networks and Communications and 5 papers in Information Systems and Management. Recurrent topics in Tomasz Żok's work include RNA and protein synthesis mechanisms (28 papers), RNA modifications and cancer (16 papers) and RNA Research and Splicing (8 papers). Tomasz Żok is often cited by papers focused on RNA and protein synthesis mechanisms (28 papers), RNA modifications and cancer (16 papers) and RNA Research and Splicing (8 papers). Tomasz Żok collaborates with scholars based in Poland, France and Germany. Tomasz Żok's co-authors include Marta Szachniuk, Mariusz Popenda, Maciej Antczak, Ryszard W. Adamiak, Jacek Błażewicz, Joanna Sarzyńska, Katarzyna Tomczyk, Tomasz Ratajczak, Piotr Łukasiak and Alex Bateman and has published in prestigious journals such as Nucleic Acids Research, Bioinformatics and PLoS ONE.

In The Last Decade

Tomasz Żok

33 papers receiving 705 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Tomasz Żok Poland	14	652	71	61	40	36	35	713
Dazhi Tan United States	9	576 0.9×	52 0.7×	85 1.4×	26 0.7×	21 0.6×	9	643
Marcin Magnus Poland	12	550 0.8×	38 0.5×	48 0.8×	33 0.8×	51 1.4×	20	600
Isabelle Lebars France	15	426 0.7×	46 0.6×	21 0.3×	68 1.7×	25 0.7×	23	477
Irina Tuszyńska Poland	14	595 0.9×	53 0.7×	50 0.8×	47 1.2×	55 1.5×	18	657
Jerod Parsons United States	9	435 0.7×	45 0.6×	55 0.9×	24 0.6×	31 0.9×	14	515
Daiva Petkevičiūtė-Gerlach Switzerland	7	880 1.3×	178 2.5×	63 1.0×	78 1.9×	17 0.5×	11	946
Parin Sripakdeevong United States	5	440 0.7×	30 0.4×	69 1.1×	49 1.2×	12 0.3×	7	543
Kevin S. Keating United States	15	1.2k 1.8×	122 1.7×	144 2.4×	98 2.5×	24 0.7×	21	1.3k
Delphine Flatters France	11	417 0.6×	52 0.7×	42 0.7×	50 1.3×	23 0.6×	27	530
Colin G. Wu United States	12	588 0.9×	34 0.5×	30 0.5×	129 3.2×	41 1.1×	17	640

Countries citing papers authored by Tomasz Żok

Since Specialization

Citations

This map shows the geographic impact of Tomasz Żok's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tomasz Żok with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tomasz Żok more than expected).

Fields of papers citing papers by Tomasz Żok

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tomasz Żok. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tomasz Żok. The network helps show where Tomasz Żok may publish in the future.

Co-authorship network of co-authors of Tomasz Żok

This figure shows the co-authorship network connecting the top 25 collaborators of Tomasz Żok. A scholar is included among the top collaborators of Tomasz Żok based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Tomasz Żok. Tomasz Żok is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Rybarczyk, Agnieszka, et al.. (2025). Comprehensive datasets for RNA design, machine learning, and beyond. Scientific Reports. 15(1). 21417–21417. 1 indexed citations

Antczak, Maciej, et al.. (2024). Knotted artifacts in predicted 3D RNA structures. PLoS Computational Biology. 20(6). e1011959–e1011959. 1 indexed citations

Żok, Tomasz, et al.. (2024). Datasets for Benchmarking RNA Design Algorithms. Methods in molecular biology. 2847. 229–240. 1 indexed citations

Adamczyk, Bartosz, et al.. (2024). RNAtango: Analysing and comparing RNA 3D structures via torsional angles. PLoS Computational Biology. 20(10). e1012500–e1012500. 2 indexed citations

Adamczyk, Bartosz, et al.. (2023). WebTetrado: a webserver to explore quadruplexes in nucleic acid 3D structures. Nucleic Acids Research. 51(W1). W607–W612. 4 indexed citations

Kryshtafovych, Andriy, Maciej Antczak, Marta Szachniuk, et al.. (2023). New prediction categories in CASP15. Proteins Structure Function and Bioinformatics. 91(12). 1550–1557. 37 indexed citations

Schneider, Bohdan, et al.. (2023). When will RNA get its AlphaFold moment?. Nucleic Acids Research. 51(18). 9522–9532. 52 indexed citations

Żok, Tomasz, et al.. (2021). Progress in the transferability of fusion workflows across HPC systems. Plasma Physics and Controlled Fusion. 63(8). 84004–84004.

Żok, Tomasz. (2021). BioCommons: a robust java library for RNA structural bioinformatics. Bioinformatics. 37(17). 2766–2767. 4 indexed citations

10.

Żok, Tomasz, et al.. (2020). New models and algorithms for RNA pseudoknot order assignment. International Journal of Applied Mathematics and Computer Science. 30(2). 4 indexed citations

11.

Żok, Tomasz, Mariusz Popenda, & Marta Szachniuk. (2020). ElTetrado: a tool for identification and classification of tetrads and quadruplexes. BMC Bioinformatics. 21(1). 40–40. 10 indexed citations

12.

Żok, Tomasz, et al.. (2020). RNAthor – fast, accurate normalization, visualization and statistical analysis of RNA probing data resolved by capillary electrophoresis. PLoS ONE. 15(10). e0239287–e0239287. 13 indexed citations

13.

Magnus, Marcin, Maciej Antczak, Tomasz Żok, et al.. (2019). RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools. Nucleic Acids Research. 48(2). 576–588. 58 indexed citations

14.

Antczak, Maciej, et al.. (2018). RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures. BMC Bioinformatics. 19(1). 304–304. 12 indexed citations

15.

Żok, Tomasz, Maciej Antczak, Mariusz Popenda, et al.. (2018). RNApdbee 2.0: multifunctional tool for RNA structure annotation. Nucleic Acids Research. 46(W1). W30–W35. 84 indexed citations

16.

Antczak, Maciej, Mariusz Popenda, Tomasz Żok, et al.. (2016). New functionality of RNAComposer: application to shape the axis of miR160 precursor structure. Acta Biochimica Polonica. 63(4). 737–744. 153 indexed citations

17.

Żok, Tomasz, Maciej Antczak, Thomas Villmann, et al.. (2015). Building the library of RNA 3D nucleotide conformations using the clustering approach. International Journal of Applied Mathematics and Computer Science. 25(3). 689–700. 10 indexed citations

18.

Rybarczyk, Agnieszka, Maciej Antczak, Tomasz Żok, et al.. (2015). New in silico approach to assessing RNA secondary structures with non-canonical base pairs. BMC Bioinformatics. 16(1). 276–276. 26 indexed citations

19.

Żok, Tomasz, Mariusz Popenda, & Marta Szachniuk. (2013). MCQ4Structures to compute similarity of molecule structures. Central European Journal of Operations Research. 22(3). 457–473. 32 indexed citations

20.

Płóciennik, Marcin, Tomasz Żok, F. Castejón, et al.. (2012). Application Scenarios Using Serpens Suite for Kepler Scientific Workflow System. Procedia Computer Science. 9. 1604–1613. 1 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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