Simone Marini

3.1k total citations · 1 hit paper
69 papers, 1.5k citations indexed

About

Simone Marini is a scholar working on Molecular Biology, Epidemiology and Infectious Diseases. According to data from OpenAlex, Simone Marini has authored 69 papers receiving a total of 1.5k indexed citations (citations by other indexed papers that have themselves been cited), including 34 papers in Molecular Biology, 14 papers in Epidemiology and 11 papers in Infectious Diseases. Recurrent topics in Simone Marini's work include Genomics and Phylogenetic Studies (10 papers), Antibiotic Resistance in Bacteria (8 papers) and SARS-CoV-2 and COVID-19 Research (7 papers). Simone Marini is often cited by papers focused on Genomics and Phylogenetic Studies (10 papers), Antibiotic Resistance in Bacteria (8 papers) and SARS-CoV-2 and COVID-19 Research (7 papers). Simone Marini collaborates with scholars based in United States, Italy and Japan. Simone Marini's co-authors include Riccardo Bellazzi, Lucia Sacchi, Arianna Dagliati, Pasquale De Cata, Valentina Tibollo, Marsida Teliti, Luca Chiovato, Giulia Cogni, Jun Z. Li and Mattia Prosperi and has published in prestigious journals such as Nucleic Acids Research, SHILAP Revista de lepidopterología and Physical review. B, Condensed matter.

In The Last Decade

Simone Marini

68 papers receiving 1.5k citations

Hit Papers

Machine Learning Methods to Predict Diabetes Complications 2017 2026 2020 2023 2017 50 100 150 200 250
What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

  1. Machine Learning Methods to Predict Diabetes Complications
    2017 252 citations Simone Marini, Lucia Sacchi et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Simone Marini United States 19 596 244 231 190 145 69 1.5k
Davood Bashash Iran 31 1.6k 2.7× 139 0.6× 169 0.7× 34 0.2× 37 0.3× 200 3.6k
Tzu‐Hao Chang Taiwan 29 2.3k 3.9× 184 0.8× 78 0.3× 23 0.1× 160 1.1× 114 3.8k
Thangavel Alphonse Thanaraj Kuwait 25 2.2k 3.6× 575 2.4× 78 0.3× 85 0.4× 14 0.1× 97 3.3k
Raivo Kolde Estonia 26 1.9k 3.1× 260 1.1× 82 0.4× 15 0.1× 30 0.2× 55 2.9k
Philipp E. Geyer Germany 25 2.2k 3.8× 257 1.1× 62 0.3× 18 0.1× 17 0.1× 38 4.1k
Xiaowei Zhan United States 24 1.2k 2.0× 376 1.5× 393 1.7× 27 0.1× 9 0.1× 75 2.6k
Raquel Dias United States 17 707 1.2× 232 1.0× 217 0.9× 57 0.3× 4 0.0× 44 1.6k
Anat Reiner‐Benaim Israel 15 993 1.7× 206 0.8× 69 0.3× 15 0.1× 10 0.1× 45 2.1k
Philippe Gain France 24 274 0.5× 40 0.2× 142 0.6× 201 1.1× 17 0.1× 108 2.8k
John Byrnes United States 38 1.0k 1.7× 260 1.1× 89 0.4× 11 0.1× 22 0.2× 133 4.3k

Countries citing papers authored by Simone Marini

Since Specialization
Citations

This map shows the geographic impact of Simone Marini's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Simone Marini with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Simone Marini more than expected).

Fields of papers citing papers by Simone Marini

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Simone Marini. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Simone Marini. The network helps show where Simone Marini may publish in the future.

Co-authorship network of co-authors of Simone Marini

This figure shows the co-authorship network connecting the top 25 collaborators of Simone Marini. A scholar is included among the top collaborators of Simone Marini based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Simone Marini. Simone Marini is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Liu, Yiyang, et al.. (2025). Behavioral and Demographic Profiles of HIV Transmission and Exposure Networks in Florida: Network Analysis of HIV Contact Tracing Data. JMIR Public Health and Surveillance. 11. e65573–e65573. 1 indexed citations
2.
Marini, Simone, et al.. (2024). Sequencing Efforts and Epidemiological Trends: Analyzing SARS-CoV-2 Dynamics Across European Nations. Aisberg (University of Bergamo). 6183–6188. 2 indexed citations
3.
Nicora, Giovanna, et al.. (2024). Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders. Briefings in Bioinformatics. 25(6). 7 indexed citations
4.
Marini, Simone, Christina Boucher, Noelle Noyes, & Mattia Prosperi. (2023). The K-mer antibiotic resistance gene variant analyzer (KARGVA). Frontiers in Microbiology. 14. 1060891–1060891. 3 indexed citations
5.
Marini, Simone, Rodrígo Mora, Christina Boucher, Noelle Noyes, & Mattia Prosperi. (2022). Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing. Briefings in Bioinformatics. 23(2). 2 indexed citations
6.
Patel, Nicole, Johanna Nunez, Michael Sorkin, et al.. (2022). Macrophage TGF-β signaling is critical for wound healing with heterotopic ossification after trauma. JCI Insight. 7(20). 25 indexed citations
7.
Nicora, Giovanna, Marco Salemi, Simone Marini, & Riccardo Bellazzi. (2022). Predicting emerging SARS-CoV-2 variants of concern through a One Class dynamic anomaly detection algorithm. BMJ Health & Care Informatics. 29(1). e100643–e100643. 9 indexed citations
8.
Marini, Simone, Carla Mavian, Alberto Riva, et al.. (2021). Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics. Bioinformatics. 38(3). 856–860. 10 indexed citations
9.
Marini, Simone, Stefano Negri, Yiyun Wang, et al.. (2020). Endogenous CCN family member WISP1 inhibits trauma-induced heterotopic ossification. JCI Insight. 5(13). 16 indexed citations
10.
Panelli, Simona, Enrica Capelli, Giuseppe Lupo, et al.. (2020). Comparative Study of Salivary, Duodenal, and Fecal Microbiota Composition Across Adult Celiac Disease. Journal of Clinical Medicine. 9(4). 1109–1109. 27 indexed citations
11.
Sono, Takashi, Ching-Yun Hsu, Yiyun Wang, et al.. (2020). Perivascular Fibro-Adipogenic Progenitor Tracing during Post-Traumatic Osteoarthritis. American Journal Of Pathology. 190(9). 1909–1920. 17 indexed citations
12.
Mavian, Carla, Simone Marini, Mattia Prosperi, & Marco Salemi. (2020). A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis. JMIR Public Health and Surveillance. 6(2). e19170–e19170. 23 indexed citations
13.
Damiani, Stefano, Livio Tarchi, Andrea Scalabrini, et al.. (2020). Beneath the surface: hyper-connectivity between caudate and salience regions in ADHD fMRI at rest. European Child & Adolescent Psychiatry. 30(4). 619–631. 25 indexed citations
14.
Agarwal, Shailesh, Shawn Loder, David Cholok, et al.. (2019). Disruption of Neutrophil Extracellular Traps (NETs) Links Mechanical Strain to Post-traumatic Inflammation. Frontiers in Immunology. 10. 2148–2148. 29 indexed citations
15.
Marini, Simone, et al.. (2018). Protease target prediction via matrix factorization. Bioinformatics. 35(6). 923–929. 9 indexed citations
16.
Ma, Qianyi, Gabriel Manske, Adrienne Niederriter Shami, et al.. (2018). A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq. Developmental Cell. 46(5). 651–667.e10. 330 indexed citations
17.
Parimbelli, Enea, Simone Marini, Lucia Sacchi, & Riccardo Bellazzi. (2018). Patient similarity for precision medicine: A systematic review. Journal of Biomedical Informatics. 83. 87–96. 101 indexed citations
18.
Biscarini, Filippo, Nelson Nazzicari, Chiara Broccanello, Piergiorgio Stevanato, & Simone Marini. (2016). “Noisy beets”: impact of phenotyping errors on genomic predictions for binary traits in Beta vulgaris. Plant Methods. 12(1). 36–36. 3 indexed citations
19.
Marini, Simone, Nicola Barbarini, Francesco Sambo, et al.. (2015). A Dynamic Bayesian Network model for long-term simulation of clinical complications in type 1 diabetes. Journal of Biomedical Informatics. 57. 369–376. 38 indexed citations
20.
Osera, Cecilia, et al.. (2013). The Role of SwrA, DegU and PD3 in fla/che Expression in B. subtilis. PLoS ONE. 8(12). e85065–e85065. 34 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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