Shinji Amari

1.3k total citations
16 papers, 913 citations indexed

About

Shinji Amari is a scholar working on Molecular Biology, Infectious Diseases and Cellular and Molecular Neuroscience. According to data from OpenAlex, Shinji Amari has authored 16 papers receiving a total of 913 indexed citations (citations by other indexed papers that have themselves been cited), including 14 papers in Molecular Biology, 3 papers in Infectious Diseases and 3 papers in Cellular and Molecular Neuroscience. Recurrent topics in Shinji Amari's work include Protein Structure and Dynamics (4 papers), Photosynthetic Processes and Mechanisms (4 papers) and Spectroscopy and Quantum Chemical Studies (3 papers). Shinji Amari is often cited by papers focused on Protein Structure and Dynamics (4 papers), Photosynthetic Processes and Mechanisms (4 papers) and Spectroscopy and Quantum Chemical Studies (3 papers). Shinji Amari collaborates with scholars based in Japan and Germany. Shinji Amari's co-authors include Tatsuya Nakano, Yuji Mochizuki, Kazuo Kitaura, Shigeru Koikegami, Takeshi Ishikawa, Shigenori Tanaka, Katsunori Segawa, Kaori Fukuzawa, Kotoko Nakata and Yoshio Iwasawa and has published in prestigious journals such as The Journal of Physical Chemistry B, Biochemical and Biophysical Research Communications and Chemical Physics Letters.

In The Last Decade

Shinji Amari

16 papers receiving 895 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Shinji Amari Japan	12	422	245	199	198	146	16	913
Alessandro Brigo Switzerland	11	576 1.4×	131 0.5×	242 1.2×	100 0.5×	98 0.7×	18	1.1k
Hirofumi Watanabe Japan	19	566 1.3×	223 0.9×	166 0.8×	55 0.3×	121 0.8×	50	945
Chiduru Watanabe Japan	18	550 1.3×	151 0.6×	270 1.4×	86 0.4×	99 0.7×	55	898
J. Chris Culberson United States	14	356 0.8×	167 0.7×	320 1.6×	91 0.5×	106 0.7×	23	904
Yoshio Okiyama Japan	22	623 1.5×	394 1.6×	384 1.9×	121 0.6×	207 1.4×	48	1.3k
Guy H. Grant United Kingdom	21	696 1.6×	122 0.5×	101 0.5×	140 0.7×	124 0.8×	53	1.3k
Antonio Morreale Spain	23	762 1.8×	123 0.5×	198 1.0×	51 0.3×	126 0.9×	62	1.5k
Zhaoxi Sun China	19	657 1.6×	215 0.9×	175 0.9×	43 0.2×	122 0.8×	69	1.0k
Atsuo Kuki United States	20	575 1.4×	241 1.0×	97 0.5×	73 0.4×	89 0.6×	36	1.0k

Countries citing papers authored by Shinji Amari

Since Specialization

Citations

This map shows the geographic impact of Shinji Amari's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shinji Amari with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shinji Amari more than expected).

Fields of papers citing papers by Shinji Amari

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shinji Amari. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shinji Amari. The network helps show where Shinji Amari may publish in the future.

Co-authorship network of co-authors of Shinji Amari

This figure shows the co-authorship network connecting the top 25 collaborators of Shinji Amari. A scholar is included among the top collaborators of Shinji Amari based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Shinji Amari. Shinji Amari is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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16 of 16 papers shown

Kataoka, Ryoichi, Shinji Amari, Takashi Ikegami, & N. Hirayama. (2020). HLABAP: HLA Class I-Binding Antigenic Peptide Predictor. 20(0). 1–4. 1 indexed citations

Amari, Shinji, Ryoichi Kataoka, Takashi Ikegami, & N. Hirayama. (2013). HLA-Modeler: Automated Homology Modeling of Human Leukocyte Antigens. PubMed. 2013. 1–6. 8 indexed citations

Mochizuki, Yuji, Tatsuya Nakano, Shinji Amari, et al.. (2009). Fragment Molecular Orbital Calculations on Red Fluorescent Proteins (DsRed and mFruits). The Journal of Physical Chemistry B. 113(4). 1153–1161. 31 indexed citations

Ishikawa, Takeshi, Yuji Mochizuki, Shinji Amari, et al.. (2008). An application of fragment interaction analysis based on local MP2. Chemical Physics Letters. 463(1-3). 189–194. 25 indexed citations

Ishikawa, Takeshi, Yuji Mochizuki, Shinji Amari, et al.. (2007). Fragment interaction analysis based on local MP2. Theoretical Chemistry Accounts. 118(5-6). 937–945. 52 indexed citations

Nakano, Tatsuya, Yuji Mochizuki, Shinji Amari, et al.. (2007). Application of Fragment Molecular Orbital (FMO) Method to Nano-Bio Field. Journal of Computer Chemistry Japan. 6(3). 173–184. 1 indexed citations

Mochizuki, Yuji, Kiyoshi Tanaka, Katsumi Yamashita, et al.. (2006). Parallelized integral-direct CIS(D) calculations with multilayer fragment molecular orbital scheme. Theoretical Chemistry Accounts. 117(4). 541–553. 59 indexed citations

Mochizuki, Yuji, Tatsuya Nakano, Shinji Amari, et al.. (2006). Fragment molecular orbital calculations on red fluorescent protein (DsRed). Chemical Physics Letters. 433(4-6). 360–367. 26 indexed citations

Ishikawa, Takeshi, Yuji Mochizuki, Tatsuya Nakano, et al.. (2006). Fragment molecular orbital calculations on large scale systems containing heavy metal atom. Chemical Physics Letters. 427(1-3). 159–165. 47 indexed citations

10.

Mochizuki, Yuji, Shigeru Koikegami, Shinji Amari, et al.. (2005). Configuration interaction singles method with multilayer fragment molecular orbital scheme. Chemical Physics Letters. 406(4-6). 283–288. 97 indexed citations

11.

Amari, Shinji, Junwei Zhang, Kaori Fukuzawa, et al.. (2005). VISCANA: Visualized Cluster Analysis of Protein−Ligand Interaction Based on the ab Initio Fragment Molecular Orbital Method for Virtual Ligand Screening. Journal of Chemical Information and Modeling. 46(1). 221–230. 107 indexed citations

12.

Zhang, Junwei, et al.. (2004). Development of KiBank, a database supporting structure-based drug design. Computational Biology and Chemistry. 28(5-6). 401–407. 35 indexed citations

13.

Onodera, Kenji, Junwei Zhang, Shinji Amari, et al.. (2004). <i>Ki</i>Bank: A Database for Computer-Aided Drug Design Based on Protein-Chemical Interaction Analysis. YAKUGAKU ZASSHI. 124(9). 613–619. 10 indexed citations

14.

Yamamoto, Norio, Rongge Yang, Yoshiyuki Yoshinaka, et al.. (2004). HIV protease inhibitor nelfinavir inhibits replication of SARS-associated coronavirus. Biochemical and Biophysical Research Communications. 318(3). 719–725. 222 indexed citations

15.

Mochizuki, Yuji, Shigeru Koikegami, Tatsuya Nakano, Shinji Amari, & Kazuo Kitaura. (2004). Large scale MP2 calculations with fragment molecular orbital scheme. Chemical Physics Letters. 396(4-6). 473–479. 170 indexed citations

16.

Kawahata, Miho, Shinji Amari, Yoshinori Nishizawa, & Rinji Akada. (1999). A positive selection for plasmid loss inSaccharomyces cerevisiae using galactose-inducible growth inhibitory sequences. Yeast. 15(1). 1–10. 22 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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