Martin Hofmann‐Apitius

16.6k total citations · 1 hit paper
290 papers, 11.6k citations indexed

About

Martin Hofmann‐Apitius is a scholar working on Molecular Biology, Agronomy and Crop Science and Computational Theory and Mathematics. According to data from OpenAlex, Martin Hofmann‐Apitius has authored 290 papers receiving a total of 11.6k indexed citations (citations by other indexed papers that have themselves been cited), including 158 papers in Molecular Biology, 54 papers in Agronomy and Crop Science and 46 papers in Computational Theory and Mathematics. Recurrent topics in Martin Hofmann‐Apitius's work include Bioinformatics and Genomic Networks (76 papers), Biomedical Text Mining and Ontologies (66 papers) and Animal Disease Management and Epidemiology (54 papers). Martin Hofmann‐Apitius is often cited by papers focused on Bioinformatics and Genomic Networks (76 papers), Biomedical Text Mining and Ontologies (66 papers) and Animal Disease Management and Epidemiology (54 papers). Martin Hofmann‐Apitius collaborates with scholars based in Germany, United Kingdom and United States. Martin Hofmann‐Apitius's co-authors include Peter Herrlich, Margot Zöller, Helmut Ponta, W. Rudy, Jon-Duri Tratschin, S. Matzku, Ursula Günthert, Helmut Ponta, Nicolas Ruggli and Simone Reber and has published in prestigious journals such as Science, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Martin Hofmann‐Apitius

279 papers receiving 11.1k citations

Hit Papers

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What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

A new variant of glycoprotein CD44 confers metastatic potential to rat carcinoma cells

1991 1.4k citations Martin Hofmann‐Apitius et al. profile →

Peers

Countries citing papers authored by Martin Hofmann‐Apitius

Since Specialization

Citations

This map shows the geographic impact of Martin Hofmann‐Apitius's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Martin Hofmann‐Apitius with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Martin Hofmann‐Apitius more than expected).

Fields of papers citing papers by Martin Hofmann‐Apitius

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Martin Hofmann‐Apitius. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Martin Hofmann‐Apitius. The network helps show where Martin Hofmann‐Apitius may publish in the future.

Co-authorship network of co-authors of Martin Hofmann‐Apitius

This figure shows the co-authorship network connecting the top 25 collaborators of Martin Hofmann‐Apitius. A scholar is included among the top collaborators of Martin Hofmann‐Apitius based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Martin Hofmann‐Apitius. Martin Hofmann‐Apitius is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Unraveling the co-morbidity between COVID-19 and neurodegenerative diseases through multi-scale graph analysis: A systematic investigation of biological databases and text mining 2025 ·SHILAP Revista de lepidopterología ·(unknown), Stefan Geißler, (unknown), (unknown), (unknown), Alpha Tom Kodamullil, Johannes Klein, Marc Jacobs, Martin Hofmann‐Apitius	0
2	Rationalism in the face of GPT hypes: Benchmarking the output of large language models against human expert-curated biomedical knowledge graphs 2024 ·SHILAP Revista de lepidopterología ·(unknown), (unknown), (unknown), Bruce Schultz, Marc Jacobs, Martin Hofmann‐Apitius	4
3	The Epilepsy Ontology: a community-based ontology tailored for semantic interoperability and text mining 2023 ·Bioinformatics Advances ·(unknown), (unknown), Stephan Gebel, (unknown), (unknown), (unknown), (unknown), Bruce Schultz, (unknown), Marc Jacobs, Sumit Madan, Martin Hofmann‐Apitius, Alpha Tom Kodamullil	2
4	Uncovering epigenetic and transcriptional regulation of growth in Douglas‐fir: identification of differential methylation regions in mega‐sized introns 2023 ·Plant Biotechnology Journal ·Giang T. H. Vu, Hieu X. Cao, Martin Hofmann‐Apitius, Wilfried Steiner, Oliver Gailing	4
5	Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets 2022 ·BMC Bioinformatics ·(unknown), (unknown), Tamara Raschka, Martin Hofmann‐Apitius, Alpha Tom Kodamullil, Sarah Mubeen, Daniel Domingo‐Fernándéz	7
6	PEMT: a patent enrichment tool for drug discovery 2022 ·Bioinformatics ·Yojana Gadiya, Andrea Zaliani, Philip Gribbon, Martin Hofmann‐Apitius	5
7	STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs 2022 ·Bioinformatics ·(unknown), Charles Tapley Hoyt, Colin Birkenbihl, Benjamin M. Gyori, John A. Bachman, Alpha Tom Kodamullil, Paul G. Plöger, Martin Hofmann‐Apitius, Daniel Domingo‐Fernándéz	17
8	Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms 2021 ·Nucleic Acids Research ·(unknown), Tamara Raschka, Alpha Tom Kodamullil, Martin Hofmann‐Apitius, Sarah Mubeen, Daniel Domingo‐Fernándéz	4
9	DecoPath: a web application for decoding pathway enrichment analysis 2021 ·NAR Genomics and Bioinformatics ·Sarah Mubeen, (unknown), Yojana Gadiya, Martin Hofmann‐Apitius, Alpha Tom Kodamullil, Daniel Domingo‐Fernándéz	3
10	CLEP: a hybrid data- and knowledge-driven framework for generating patient representations 2021 ·Bioinformatics ·(unknown), (unknown), Colin Birkenbihl, Sarah Mubeen, Jens Lehmann, Martin Hofmann‐Apitius, Charles Tapley Hoyt, Daniel Domingo‐Fernándéz	8
11	COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology 2020 ·Bioinformatics ·Daniel Domingo‐Fernándéz, Shounak Baksi, Bruce Schultz, Yojana Gadiya, Reagon Karki, Tamara Raschka, Christian Ebeling, Martin Hofmann‐Apitius, Alpha Tom Kodamullil	72
12	MultiPaths: a Python framework for analyzing multi-layer biological networks using diffusion algorithms 2020 ·Bioinformatics ·(unknown), Sarah Mubeen, Alexandre Perera-Lluna, Martin Hofmann‐Apitius, Sergio Picart‐Armada, Daniel Domingo‐Fernándéz	3
13	PTSD Biomarker Database: deep dive metadatabase for PTSD biomarkers, visualizations and analysis tools 2019 ·Database ·Daniel Domingo‐Fernándéz, Allison C. Provost, Alpha Tom Kodamullil, (unknown), Heather C. Lasseter, (unknown), Nikolaos P. Daskalakis, Lee Lancashire, Martin Hofmann‐Apitius, Magali Haas	13
14	Re-curation and rational enrichment of knowledge graphs in Biological Expression Language 2019 ·Database ·Charles Tapley Hoyt, Daniel Domingo‐Fernándéz, (unknown), (unknown), (unknown), (unknown), (unknown), John A. Bachman, Benjamin M. Gyori, (unknown), Martin Hofmann‐Apitius	15
15	Heterogeneous antigenic properties of the porcine reproductive and respiratory syndrome virus nucleocapsid 2016 ·Veterinary Research ·Julie C. F. Rappe, Obdulio García-Nicolás, (unknown), Barbara Thür, Martin Hofmann‐Apitius, Artur Summerfield, Nicolas Ruggli	12
16	Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions 2012 ·Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft) ·(unknown), Roman Klinger, Philippe Thomas, Martin Hofmann‐Apitius	15
17	PLIO: an ontology for formal description of protein–ligand interactions 2011 ·Bioinformatics ·(unknown), Erfan Younesi, M. Shahid, Antje Wolf, B. G. Müller, Martin Hofmann‐Apitius	7
18	An Empirical Evaluation of Resources for the Identification of Diseases and Adverse Effects in Biomedical Literature 2010 ·PUB – Publications at Bielefeld University (Bielefeld University) ·Harsha Gurulingappa, Roman Klinger, Martin Hofmann‐Apitius, Juliane Fluck	20
19	[Classical swine fever in 1993 in Switzerland: molecular-epidemiologic characterization of the virus isolate]. 1998 ·PubMed ·Martin Hofmann‐Apitius, (unknown)	15
20	Increasing incidence of CD44v7/8 epitope expression during uterine cervical carcinogenesis 1996 ·International Journal of Cancer ·Peter Dall, Armin Hekele, Hans Ikenberg, (unknown), Thomas Bauknecht, A. Pfleiderer, Jürgen Moll, Martin Hofmann‐Apitius, Helmut Ponta, Peter Herrlich	29

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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