Manuel Rueda

3.8k total citations
49 papers, 2.6k citations indexed

About

Manuel Rueda is a scholar working on Molecular Biology, Materials Chemistry and Spectroscopy. According to data from OpenAlex, Manuel Rueda has authored 49 papers receiving a total of 2.6k indexed citations (citations by other indexed papers that have themselves been cited), including 39 papers in Molecular Biology, 9 papers in Materials Chemistry and 8 papers in Spectroscopy. Recurrent topics in Manuel Rueda's work include Protein Structure and Dynamics (17 papers), DNA and Nucleic Acid Chemistry (9 papers) and Enzyme Structure and Function (9 papers). Manuel Rueda is often cited by papers focused on Protein Structure and Dynamics (17 papers), DNA and Nucleic Acid Chemistry (9 papers) and Enzyme Structure and Function (9 papers). Manuel Rueda collaborates with scholars based in Spain, United States and France. Manuel Rueda's co-authors include Modesto Orozco, Ruben Abagyan, F. Javier Luque, Giovanni Bottegoni, Vsevolod Katritch, Alberto Pérez, Carles Ferrer‐Costa, Pablo Chacón, Tim Meyer and Josep Lluís Gelpí and has published in prestigious journals such as Cell, Proceedings of the National Academy of Sciences and Journal of the American Chemical Society.

In The Last Decade

Manuel Rueda

49 papers receiving 2.5k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Manuel Rueda Spain 27 2.0k 507 478 310 297 49 2.6k
Marco De Vivo Italy 35 2.7k 1.4× 672 1.3× 710 1.5× 634 2.0× 209 0.7× 116 4.2k
Vittorio Limongelli Italy 36 2.6k 1.3× 633 1.2× 414 0.9× 441 1.4× 229 0.8× 84 3.8k
Thomas Steinbrecher Germany 31 1.7k 0.9× 436 0.9× 591 1.2× 407 1.3× 184 0.6× 66 2.8k
Thomas S. Rush United States 24 1.3k 0.7× 701 1.4× 536 1.1× 330 1.1× 178 0.6× 42 2.4k
Saraswathi Vishveshwara India 27 2.6k 1.3× 679 1.3× 589 1.2× 206 0.7× 290 1.0× 125 3.2k
Julien Michel United Kingdom 36 2.9k 1.5× 1.0k 2.0× 752 1.6× 607 2.0× 340 1.1× 79 3.9k
Yuk Y. Sham United States 31 2.2k 1.1× 182 0.4× 362 0.8× 625 2.0× 157 0.5× 85 3.2k
Nathalie Reuter Norway 34 2.1k 1.1× 197 0.4× 558 1.2× 167 0.5× 241 0.8× 94 3.3k
Zoe Cournia Greece 28 2.1k 1.0× 968 1.9× 510 1.1× 460 1.5× 133 0.4× 65 3.2k
Yelena V. Grinkova United States 28 2.9k 1.5× 176 0.3× 525 1.1× 169 0.5× 516 1.7× 42 4.6k

Countries citing papers authored by Manuel Rueda

Since Specialization
Citations

This map shows the geographic impact of Manuel Rueda's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Manuel Rueda with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Manuel Rueda more than expected).

Fields of papers citing papers by Manuel Rueda

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Manuel Rueda. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Manuel Rueda. The network helps show where Manuel Rueda may publish in the future.

Co-authorship network of co-authors of Manuel Rueda

This figure shows the co-authorship network connecting the top 25 collaborators of Manuel Rueda. A scholar is included among the top collaborators of Manuel Rueda based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Manuel Rueda. Manuel Rueda is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Alarcón‐Riquelme, Marta E., et al.. (2024). Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyond. BMC Bioinformatics. 25(1). 373–373. 1 indexed citations
2.
Rueda, Manuel, et al.. (2023). Convert-Pheno: A software toolkit for the interconversion of standard data models for phenotypic data. Journal of Biomedical Informatics. 149. 104558–104558. 3 indexed citations
3.
Rambla, Jordi, Michael Baudis, Tim Beck, et al.. (2022). Beacon v2 and Beacon networks: A “lingua franca” for federated data discovery in biomedical genomics, and beyond. Human Mutation. 43(6). 791–799. 22 indexed citations
4.
Rueda, Manuel, et al.. (2022). Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data. Bioinformatics. 38(19). 4656–4657. 6 indexed citations
5.
Salfati, Elias, Emily Spencer, Sarah E. Topol, et al.. (2019). Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases. Genome Medicine. 11(1). 83–83. 49 indexed citations
6.
Rueda, Manuel & Ali Torkamani. (2017). SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort. BMC Bioinformatics. 18(1). 373–373. 6 indexed citations
7.
Jones, Marilyn C., Sarah E. Topol, Manuel Rueda, et al.. (2017). Mutation of WIF1: a potential novel cause of a Nail-Patella-like disorder. Genetics in Medicine. 19(10). 1179–1183. 7 indexed citations
8.
Erikson, Galina, Dale L. Bodian, Manuel Rueda, et al.. (2016). Whole-Genome Sequencing of a Healthy Aging Cohort. Cell. 165(4). 1002–1011. 131 indexed citations
9.
Rueda, Manuel, Modesto Orozco, Maxim Totrov, & Ruben Abagyan. (2013). BioSuper: A web tool for the superimposition of biomolecules and assemblies with rotational symmetry. BMC Structural Biology. 13(1). 32–32. 7 indexed citations
10.
Pérez, Alberto, Carles Ferrer‐Costa, Manuel Rueda, et al.. (2013). Exploring Early Stages of the Chemical Unfolding of Proteins at the Proteome Scale. PLoS Computational Biology. 9(12). e1003393–e1003393. 15 indexed citations
11.
Stein, Amelie, Manuel Rueda, Alejandro Panjkovich, Modesto Orozco, & Patrick Aloy. (2011). A Systematic Study of the Energetics Involved in Structural Changes upon Association and Connectivity in Protein Interaction Networks. Structure. 19(6). 881–889. 40 indexed citations
12.
Kufareva, Irina, Manuel Rueda, Vsevolod Katritch, Raymond C. Stevens, & Ruben Abagyan. (2011). Status of GPCR Modeling and Docking as Reflected by Community-wide GPCR Dock 2010 Assessment. Structure. 19(8). 1108–1126. 234 indexed citations
13.
Katritch, Vsevolod, Manuel Rueda, & Ruben Abagyan. (2011). Ligand-Guided Receptor Optimization. Methods in molecular biology. 857. 189–205. 44 indexed citations
14.
Meyer, Tim, Marco D’Abramo, Manuel Rueda, et al.. (2010). MoDEL (Molecular Dynamics Extended Library): A Database of Atomistic Molecular Dynamics Trajectories. Structure. 18(11). 1399–1409. 118 indexed citations
15.
Velázquez-Muriel, Javier A., Manuel Rueda, Isabel Cuesta, et al.. (2009). Comparison of molecular dynamics and superfamily spaces of protein domain deformation. BMC Structural Biology. 9(1). 6–6. 31 indexed citations
16.
Rueda, Manuel, Pablo Chacón, & Modesto Orozco. (2007). Thorough Validation of Protein Normal Mode Analysis: A Comparative Study with Essential Dynamics. Structure. 15(5). 565–575. 131 indexed citations
17.
Noy, Agnes, Tim Meyer, Manuel Rueda, et al.. (2006). Data Mining of Molecular Dynamics Trajectories of Nucleic Acids. Journal of Biomolecular Structure and Dynamics. 23(4). 447–455. 12 indexed citations
18.
González, Carlos, Raimundo Gargallo, Manuel Rueda, et al.. (2005). Destabilization of Quadruplex DNA by 8‐Aminoguanine. ChemBioChem. 7(1). 46–48. 19 indexed citations
19.
Álvarez, Celedonio M., M. Esther Garcı́a, Manuel Rueda, et al.. (2005). Chemical and Electrochemical Oxidation of Diphenylphosphide-Bridged Hydrides [M2(η5-C5H5)2(μ-H)(μ-PPh2)(CO)4] and Anions [M2(η5-C5H5)2(μ-PPh2)(CO)4]-(M = Mo, W). Organometallics. 24(4). 650–658. 11 indexed citations
20.
Rueda, Manuel, F. Javier Luque, & Modesto Orozco. (2001). A theoretical investigation on the effect of remote amino groups in hydrogen bonding of nucleic acids. Biopolymers. 61(1). 52–60. 3 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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