Manesh Shah

8.2k citations

77 papers · 4.9k indexed · 1 hit paper · h-index 37

Impact in

Ecology top 1%
- Microbial Community Ecology and Physiology
- Bacteriophages and microbial interactions
Environmental Chemistry top 1%

Papers in

Environmental Chemistry 9
Spectroscopy 13
- Advanced Proteomics Techniques and Applications 13

Co-authors: Nathan C. VerBerkmoes Robert L. Hettich Jillian F. Banfield Michael P. Thelen Janet Jansson Karuna Chourey Rachna J. Ram Gene W. Tyson
Journals: Journal of Proteome Research (10 papers)Applied and Environmental Microbiology (9 papers)The ISME Journal (7 papers)Molecular & Cellular Proteomics (3 papers)Computational and Structural Biotechnology Journal (3 papers)
Partner nations: United States Canada Germany

In The Last Decade

Manesh Shah

77 papers receiving 4.8k citations

Hit Papers

align trajectories log scale

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes 2015 · 375 citations

Peers

Countries citing papers authored by Manesh Shah

Since Specialization

Citations

This map shows the geographic impact of Manesh Shah's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Manesh Shah with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Manesh Shah more than expected).

Fields of papers citing papers by Manesh Shah

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Manesh Shah. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Manesh Shah. The network helps show where Manesh Shah may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Manesh Shah, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Manesh Shah Line = papers co-authored together Manesh Shah links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Predicting receptor-ligand pairing preferences in plant-microbe interfaces via molecular dynamics and machine learning Computational and Structural Biotechnology Journal ·Érica T. Prates, Omar Demerdash, Manesh Shah, Tomás A. Rush, Udaya C. Kalluri, Daniel Jacobson	2025	2
2	Morpho-physiological and transcriptomic responses of field pennycress to waterlogging Frontiers in Plant Science ·Paola Ghiotti, Manesh Shah, Elidiane Feltrin Campos, Simona Duzinaite, Érica T. Prates, Lihuan Jiang, Yang Er-ning, Winthrop B. Phippen, Daniel Jacobson, Andrea R. Gschwend	2024	1
3	Discovery and Characterization of Fluopipamine, a Putative Cellulose Synthase 1 Antagonist within Arabidopsis Journal of Agricultural and Food Chemistry ·B Kirtley Amos, Virginia Heaven Mariboto Siagian, Érica T. Prates, Jozsef Stork, Manesh Shah, Daniel Jacobson, Seth DeBolt	2024	1
4	Network Modeling of Complex Data Sets Methods in molecular biology ·Piet Jones, Deborah Weighill, Manesh Shah, Sharlee Climer, Jeremy Schmutz, Avinash Sreedasyam, Gerald A. Tuskan, Daniel Jacobson	2020	4
5	Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation Frontiers in Genetics ·Deborah Weighill, David Macaya‐Sanz, Stephen DiFazio, Wayne Joubert, Manesh Shah, Jeremy Schmutz, Avinash Sreedasyam, Gerald A. Tuskan, Daniel Jacobson	2019	8
6	Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism Biotechnology for Biofuels ·Ranjita Biswas, Charlotte M. Wilson, Richard J. Giannone, Dawn M. Klingeman, Thomas Rydzak, Manesh Shah, Robert L. Hettich, Steven D. Brown, Adam M. Guss	2017	8
7	Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes Nature ·Jenni Hultman, Mark P. Waldrop, Rachel Mackelprang, Maude M. David, Jack W. McFarland, Steven J. Blazewicz, J. W. Harden, Merritt R. Turetsky, A. David McGuire, Manesh Shah, Nathan C. VerBerkmoes, Lang Ho Lee, Konstantinos Mavrommatis, Janet Jansson Hit paper breakdown →	2015	375
8	Discovery and annotation of small proteins using genomics, proteomics, and computational approaches Genome Research ·Xiaohan Yang, Timothy J. Tschaplinski, Gregory B. Hurst, Sara Jawdy, Paul E. Abraham, Patricia K. Lankford, Rachel M. Adams, Manesh Shah, Robert L. Hettich, Erika Lindquist, Udaya C. Kalluri, Lee E. Gunter, Christa Pennacchio, Gerald A. Tuskan	2011	94
9	Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense : global transcriptomic and proteomic analyses The ISME Journal ·Yujie Men, Helene Feil, Nathan C. VerBerkmoes, Manesh Shah, David R. Johnson, Patrick K. H. Lee, Kimberlee A. West, Stephen H. Zinder, Gary L. Andersen, Lisa Alvarez‐Cohen	2011	130
10	Ecological distribution and population physiology defined by proteomics in a natural microbial community Molecular Systems Biology ·Ryan Mueller, Vincent J. Denef, Linda H. Kalnejais, K. Blake Suttle, Brian C. Thomas, Paul Wilmes, Richard L. Smith, D. Kirk Nordstrom, R. Blaine McCleskey, Manesh Shah, Nathan C. VerBerkmoes, Robert L. Hettich, Jillian F. Banfield	2010	56
11	Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge BMC Genomics ·Dorothea K. Thompson, Karuna Chourey, Gene S. Wickham, Duaa Yusuf Alhaddad, Nathan C. VerBerkmoes, Bing Zhang, Senthil Kumar C., В. Н. Мосьпан, Manesh Shah, Robert L. Hettich	2010	52
12	Community genomic and proteomic analysis of chemoautotrophic, iron-oxidizing "Leptospirillum rubarum" (Group II) and Leptospirillum ferrodiazotrophum (Group III) in acid mine drainage biofilms Applied Microbiology and Biotechnology ·Daniela S. Aliaga Goltsman, Vincent J. Denef, Steven W. Singer, Nathan C. VerBerkmoes, Mark Lefsrud, Ryan Mueller, Gregory J. Dick, Christine Sun, Korin E. Wheeler, Jaqueline Marcelino de Souza, Brett J. Baker, Loren Hauser, Miriam Land, Manesh Shah, Michael P. Thelen, Robert L. Hettich, Jillian F. Banfield	2009	6
13	Impact of Phenolic Substrate and Growth Temperature on theArthrobacter chlorophenolicusProteome Journal of Proteome Research ·Pierre-Olivier Porte, Paul E. Abraham, Manesh Shah, Bing Zhang, Christian Rückert, Nathan C. VerBerkmoes, Janet Jansson	2009	14
14	Shotgun metaproteomics of the human distal gut microbiota The ISME Journal ·Nathan C. VerBerkmoes, Alison Lawlor Russell, Manesh Shah, Adam Godzik, Magnus Rosenquist, Jonas Halfvarson, Mark Lefsrud, J. Apajalahti, Curt Tysk, Robert L. Hettich, Janet Jansson	2008	400
15	Proteomics‐inferred genome typing (PIGT) demonstrates inter‐population recombination as a strategy for environmental adaptation Environmental Microbiology ·Vincent J. Denef, Nathan C. VerBerkmoes, Manesh Shah, Paul E. Abraham, Mark Lefsrud, Robert L. Hettich, Jillian F. Banfield	2008	49
16	Dosage-Dependent Proteome Response of Shewanella oneidensis MR-1 to Acute Chromate Challenge Journal of Proteome Research ·Melissa Thompson, Nathan C. VerBerkmoes, Karuna Chourey, Manesh Shah, Dorothea K. Thompson, Robert L. Hettich	2007	51
17	Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria Nature ·Ian Lo, Vincent J. Denef, Nathan C. VerBerkmoes, Manesh Shah, Daniela S. Aliaga Goltsman, Jurgen Haacke, Gene W. Tyson, Eric E. Allen, Rachna J. Ram, John C. Detter, Paul Richardson, Michael P. Thelen, Robert L. Hettich, Jillian F. Banfield	2007	174
18	Molecular Dynamics of the Shewanella oneidensis Response to Chromate Stress Molecular & Cellular Proteomics ·Steven D. Brown, Melissa Thompson, Nathan C. VerBerkmoes, Karuna Chourey, Manesh Shah, Jizhong Zhou, Robert L. Hettich, Dorothea K. Thompson	2006	146
19	Characterization of Protein Structure and Function at Genome Scale with a Computational Prediction Pipeline PubMed ·Dong Xu, Dongsup Kim, Phuongan Dam, Manesh Shah, Edward C. Uberbacher, Ying Xu	2003	3
20	Detection of RNA polymerase II promoters and polyadenylation sites in human DNA sequence Computers & Chemistry ·I. Büsching, Ying Xu, Manesh Shah, Xiaojun Guan, J. R. Einstein, Richard Mural, Edward C. Uberbacher	1996	23

About Manesh Shah

Manesh Shah is a scholar working on Environmental Chemistry, Spectroscopy, Molecular Biology, Structural Biology and Ecology, having authored 77 papers that have together received 4.9k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (25 papers), Microbial Community Ecology and Physiology (13 papers), Advanced Proteomics Techniques and Applications (13 papers), Machine Learning in Bioinformatics (9 papers), Microbial Fuel Cells and Bioremediation (9 papers), Metal Extraction and Bioleaching (9 papers), RNA and protein synthesis mechanisms (8 papers) and Metabolomics and Mass Spectrometry Studies (7 papers). The work is most often cited by research in Ecology (1.7k citations), Environmental Chemistry (556 citations), Spectroscopy (720 citations), Molecular Biology (2.8k citations) and Pollution (419 citations). Manesh Shah has collaborated with scholars based in United States, Canada and Germany. Frequent co-authors include Nathan C. VerBerkmoes, Robert L. Hettich, Jillian F. Banfield, Michael P. Thelen, Janet Jansson, Karuna Chourey, Rachna J. Ram, Gene W. Tyson, Brett J. Baker and Mark Lefsrud. Their work appears in journals such as Journal of Proteome Research, Applied and Environmental Microbiology, The ISME Journal, Molecular & Cellular Proteomics and Computational and Structural Biotechnology Journal.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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