Lye Meng Markillie

3.8k citations

58 papers · 2.1k indexed · 1 hit paper · h-index 24

Co-authors: Ronald C. Taylor Galya Orr H Wiley William Chrisler Hugh Mitchell Michael J. Wilkins Bryan Linggi Laura Hug
Topics: Microbial Community Ecology and Physiology (9 papers)Enzyme-mediated dye degradation (5 papers)Single-cell and spatial transcriptomics (5 papers)
Cited by: Ecology Parasitology Environmental Chemistry
Journals: Proceedings of the National Academy of Sciences Nucleic Acids Research Nature Communications
Partner nations: United States Netherlands Australia

In The Last Decade

Lye Meng Markillie

56 papers receiving 2.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

2015 392 citations Cindy J. Castelle, Kelly Wrighton et al. Current Biology profile →

Peers

Countries citing papers authored by Lye Meng Markillie

Since Specialization

Citations

This map shows the geographic impact of Lye Meng Markillie's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Lye Meng Markillie with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Lye Meng Markillie more than expected).

Fields of papers citing papers by Lye Meng Markillie

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Lye Meng Markillie. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Lye Meng Markillie. The network helps show where Lye Meng Markillie may publish in the future.

Co-authorship network of co-authors of Lye Meng Markillie

This figure shows the co-authorship network connecting the top 25 collaborators of Lye Meng Markillie. A scholar is included among the top collaborators of Lye Meng Markillie based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Lye Meng Markillie. Lye Meng Markillie is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Metabolic profiling of two white-rot fungi during 4-hydroxybenzoate conversion reveals biotechnologically relevant biosynthetic pathways 2025 ·Communications Biology ·Lummy Maria Oliveira Monteiro,Carlos del Cerro,Teeratas Kijpornyongpan,Allison Yaguchi,Anna K. Bennett,Bryon S. Donohoe,Kelsey J. Ramirez,Andrew K. Benson,Hugh Mitchell,Samuel Purvine,Lye Meng Markillie,Meagan Burnet,Kent Bloodsworth,Benjamin P. Bowen,(unknown),Katherine Louie,Trent R. Northen,Davinia Salvachúa	2
2	Novel synthetic inducible promoters controlling gene expression during water‐deficit stress with green tissue specificity in transgenic poplar 2024 ·Plant Biotechnology Journal ·Yongil Yang,(unknown),Yuanhua Shao,Vimal Kumar Balasubramanian,Lye Meng Markillie,Hugh Mitchell,María M. Rubio-Wilhelmi,Amir Ahkami,Eduardo Blumwald,C. Neal Stewart	7
3	Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet splitting 2024 ·Nature Communications ·James Fulcher,Lye Meng Markillie,Hugh Mitchell,Sarah Williams,Kristin Engbrecht,(unknown),Lisa Bramer,Ronald Moore,William Chrisler,(unknown),Johannes Bagnoli,Weijun Qian,Anjali Seth,Ljiljana Paša‐Tolić,Ying Zhu	13
4	Oligosaccharide production and signaling correlate with delayed flowering in an Arabidopsis genotype grown and selected in high [CO2] 2023 ·PLoS ONE ·Hannah Kinmonth‐Schultz,S. Walker,Kerem Bingol,David Hoyt,Young‐Mo Kim,Lye Meng Markillie,Hugh Mitchell,Carrie Nicora,Ronald C. Taylor,Joy Ward	0
5	Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium 2023 ·The ISME Journal ·Elizabeth McDaniel,Matthew Scarborough,Daniel Mulat,Xuan Lin,(unknown),Heather Olson,Robert Young,Elizabeth Eder,Isaac Attah,Lye Meng Markillie,David Hoyt,Mary Lipton,Steven Hallam,Ryan Ziels	16
6	Distinctive carbon repression effects in the carbohydrate-selective wood decay fungus Rhodonia placenta 2022 ·Fungal Genetics and Biology ·Jiwei Zhang,Lye Meng Markillie,Hugh Mitchell,Matthew Gaffrey,Galya Orr,Jonathan S. Schilling	10
7	High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip 2021 ·Nature Communications ·Jongmin Jacob Woo,Sarah Williams,Lye Meng Markillie,Song Feng,Chia‐Feng Tsai,(unknown),Ryan Sontag,Ronald Moore,Dehong Hu,Hardeep Mehta,(unknown),Tao Liu,Joshua Adkins,Richard Smith,Gérémy Clair,Ljiljana Paša‐Tolić,Ying Zhu	119
8	Metabolic Interactions between Brachypodium and Pseudomonas fluorescens under Controlled Iron-Limited Conditions 2021 ·mSystems ·Rene Boiteau,Lye Meng Markillie,David Hoyt,Dehong Hu,Rosalie Chu,Hugh Mitchell,Ljiljana Paša‐Tolić,Janet Jansson,Christer Jansson	19
9	Intracellular pathways for lignin catabolism in white-rot fungi 2021 ·Proceedings of the National Academy of Sciences ·Carlos del Cerro,Erika Erickson,Tao Dong,Allison R. Wong,Elizabeth Eder,Samuel Purvine,Hugh Mitchell,Karl Weitz,Lye Meng Markillie,Meagan Burnet,David Hoyt,Rosalie Chu,Jan‐Fang Cheng,Kelsey J. Ramirez,Rui Katahira,Wei Xiong,Michael E. Himmel,Venkataramanan Subramanian,Jeffrey Linger,Davinia Salvachúa	140
10	Re-routing of Sugar Catabolism Provides a Better Insight Into Fungal Flexibility in Using Plant Biomass-Derived Monomers as Substrates 2021 ·Frontiers in Bioengineering and Biotechnology ·(unknown),Mao Peng,Lye Meng Markillie,Hugh Mitchell,Carrie Nicora,(unknown),Vanessa Paurus,Nikola Tolić,Chaevien Clendinen,Galya Orr,Scott Baker,Miia Mäkelä,Ronald P. de Vries	7
11	Subtoxic dose of lithium cobalt oxide nanosheets impacts critical molecular pathways in trout gill epithelial cells 2020 ·Environmental Science Nano ·Arielle C. Mensch,Hugh Mitchell,Lye Meng Markillie,Elizabeth D. Laudadio,(unknown),Alice Dohnálková,Michael P. Schwartz,Robert J. Hamers,Galya Orr	6
12	Rosette core fungal resistance in Arabidopsis thaliana 2019 ·Planta ·(unknown),Huw A. Ogilvie,Yuan Liu,Michael Huang,Lye Meng Markillie,Hugh Mitchell,Eli J. Borrego,Michael V. Kolomiets,Matthew Gaffrey,Galya Orr,E. Wassim Chehab,(unknown),Janet Braam	2
13	Reference genes for accurate normalization of gene expression in wood-decomposing fungi 2018 ·Fungal Genetics and Biology ·Jiwei Zhang,Hugh Mitchell,Lye Meng Markillie,Matthew Gaffrey,Galya Orr,Jonathan S. Schilling	8
14	Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium 2017 ·PLoS ONE ·Roberto Orellana,(unknown),Lye Meng Markillie,Hugh Mitchell,(unknown),Galya Orr,Kristen M. DeAngelis	13
15	Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach 2017 ·Frontiers in Microbiology ·Stephen R. Lindemann,Jennifer M. Mobberley,Jessica K. Cole,Lye Meng Markillie,Ronald C. Taylor,Eric Huang,William Chrisler,H Wiley,Mary Lipton,William Nelson,James K. Fredrickson,Margaret F. Romine	42
16	Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus 2016 ·The ISME Journal ·Cristina Howard‐Varona,Simon Roux,Hugo Doré,Natalie Solonenko,Karin Holmfeldt,Lye Meng Markillie,Galya Orr,Matthew B. Sullivan	42
17	Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142 2015 ·Scientific Reports ·Hans C. Bernstein,Moiz A. Charania,Ryan McClure,Natalie Sadler,Matthew R. Melnicki,Eric A. Hill,Lye Meng Markillie,Carrie Nicora,Aaron Wright,Margaret F. Romine,Alexander S. Beliaev	10
18	Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cyclingbreakdown → 2015 ·Current Biology ·Cindy J. Castelle,Kelly Wrighton,Brian C. Thomas,Laura Hug,Christopher T. Brown,Michael J. Wilkins,Kyle R. Frischkorn,Susannah G. Tringe,Andrea Singh,Lye Meng Markillie,Ronald C. Taylor,Kenneth H. Williams,Jillian F. Banfield	392
19	Improved Method for Isolation of Microbial RNA from Biofuel Feedstock for Metatranscriptomics 2013 ·Advances in Microbiology ·Hailan Piao,Lye Meng Markillie,David Culley,Roderick I. Mackie,Matthias Hess	2
20	Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics 2013 ·PLoS ONE ·(unknown),Junfeng Xue,Lye Meng Markillie,Ronald C. Taylor,H Wiley,Birgitte K. Ahring,Bryan Linggi	27

About Lye Meng Markillie

Lye Meng Markillie is a scholar working on Structural Biology, Biophysics and Biotechnology, having authored 58 papers that have together received 2.1k indexed citations. Recurring topics across this work include Microbial Community Ecology and Physiology (9 papers), Enzyme-mediated dye degradation (5 papers) and Single-cell and spatial transcriptomics (5 papers). The work is most often cited by research in Ecology (621 citations), Parasitology (150 citations) and Environmental Chemistry (203 citations). Lye Meng Markillie has collaborated with scholars based in United States, Netherlands and Australia. Frequent co-authors include Ronald C. Taylor, Galya Orr, H Wiley, William Chrisler, Hugh Mitchell, Michael J. Wilkins, Bryan Linggi, Laura Hug, Brian C. Thomas and Christopher T. Brown. Their work appears in journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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