Lye Meng Markillie

3.8k citations

58 papers · 2.1k indexed · 1 hit paper · h-index 24

Ecology top 5%
- Microbial Community Ecology and Physiology 9
Parasitology top 5%
Environmental Chemistry top 5%
Molecular Biology top 10%
- Single-cell and spatial transcriptomics 5
- Genomics and Phylogenetic Studies 5
- Photosynthetic Processes and Mechanisms 5
- Protein Kinase Regulation and GTPase Signaling 3
Biotechnology top 10%
Plant Science
- Enzyme-mediated dye degradation 5
Environmental Engineering
- Microbial Fuel Cells and Bioremediation 4
Biomedical Engineering
- Biofuel production and bioconversion 4

Co-authors: Ronald C. Taylor Galya Orr H Wiley William Chrisler Hugh Mitchell Michael J. Wilkins Bryan Linggi Laura Hug
Cited by: Ecology Parasitology Environmental Chemistry
Journals: Proceedings of the National Academy of Sciences (1 paper)Nucleic Acids Research (2 papers)Nature Communications (3 papers)
Partner nations: United States Netherlands Australia

In The Last Decade

Lye Meng Markillie

56 papers receiving 2.1k citations

Hit Papers

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Peers

Countries citing papers authored by Lye Meng Markillie

Since Specialization

Citations

This map shows the geographic impact of Lye Meng Markillie's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Lye Meng Markillie with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Lye Meng Markillie more than expected).

Fields of papers citing papers by Lye Meng Markillie

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Lye Meng Markillie. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Lye Meng Markillie. The network helps show where Lye Meng Markillie may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Lye Meng Markillie, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Lye Meng Markillie Line = papers co-authored together Lye Meng Markillie links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Metabolic profiling of two white-rot fungi during 4-hydroxybenzoate conversion reveals biotechnologically relevant biosynthetic pathways Communications Biology ·Lummy Maria Oliveira Monteiro,Carlos del Cerro,Teeratas Kijpornyongpan,Allison Yaguchi,Anna K. Bennett,Bryon S. Donohoe,Kelsey J. Ramirez,Andrew K. Benson,Hugh Mitchell,Samuel Purvine,Lye Meng Markillie,Meagan Burnet,Kent Bloodsworth,Benjamin P. Bowen,Thomas V. Harwood,Katherine Louie,Trent R. Northen,Davinia Salvachúa	2025	2
2	Novel synthetic inducible promoters controlling gene expression during water‐deficit stress with green tissue specificity in transgenic poplar Plant Biotechnology Journal ·Yongil Yang,Timothy A. Chaffin,Yuanhua Shao,Vimal Kumar Balasubramanian,Lye Meng Markillie,Hugh Mitchell,María M. Rubio-Wilhelmi,Amir Ahkami,Eduardo Blumwald,C. Neal Stewart	2024	7
3	Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet splitting Nature Communications ·James Fulcher,Lye Meng Markillie,Hugh Mitchell,Sarah Williams,Kristin Engbrecht,David J. Degnan,Lisa Bramer,Ronald Moore,William Chrisler,Joshua Cantlon-Bruce,Johannes Bagnoli,Weijun Qian,Anjali Seth,Ljiljana Paša‐Tolić,Ying Zhu	2024	13
4	Oligosaccharide production and signaling correlate with delayed flowering in an Arabidopsis genotype grown and selected in high [CO2] PLoS ONE ·Hannah Kinmonth‐Schultz,S. Walker,Kerem Bingol,David Hoyt,Young‐Mo Kim,Lye Meng Markillie,Hugh Mitchell,Carrie Nicora,Ronald C. Taylor,Joy Ward	2023	0
5	Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium The ISME Journal ·Elizabeth McDaniel,Matthew Scarborough,Daniel Mulat,Xuan Lin,Pranav Sampara,Heather Olson,Robert Young,Elizabeth Eder,Isaac Attah,Lye Meng Markillie,David Hoyt,Mary Lipton,Steven Hallam,Ryan Ziels	2023	16
6	Distinctive carbon repression effects in the carbohydrate-selective wood decay fungus Rhodonia placenta Fungal Genetics and Biology ·Jiwei Zhang,Lye Meng Markillie,Hugh Mitchell,Matthew Gaffrey,Galya Orr,Jonathan S. Schilling	2022	10
7	High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip Nature Communications ·Jongmin Jacob Woo,Sarah Williams,Lye Meng Markillie,Song Feng,Chia‐Feng Tsai,Victor Aguilera-Vazquez,Ryan Sontag,Ronald Moore,Dehong Hu,Hardeep Mehta,Joshua Cantlon-Bruce,Tao Liu,Joshua Adkins,Richard Smith,Gérémy Clair,Ljiljana Paša‐Tolić,Ying Zhu	2021	119
8	Metabolic Interactions between Brachypodium and Pseudomonas fluorescens under Controlled Iron-Limited Conditions mSystems ·Rene Boiteau,Lye Meng Markillie,David Hoyt,Dehong Hu,Rosalie Chu,Hugh Mitchell,Ljiljana Paša‐Tolić,Janet Jansson,Christer Jansson	2021	19
9	Intracellular pathways for lignin catabolism in white-rot fungi Proceedings of the National Academy of Sciences ·Carlos del Cerro,Erika Erickson,Tao Dong,Allison R. Wong,Elizabeth Eder,Samuel Purvine,Hugh Mitchell,Karl Weitz,Lye Meng Markillie,Meagan Burnet,David Hoyt,Rosalie Chu,Jan‐Fang Cheng,Kelsey J. Ramirez,Rui Katahira,Wei Xiong,Michael E. Himmel,Venkataramanan Subramanian,Jeffrey Linger,Davinia Salvachúa	2021	140
10	Re-routing of Sugar Catabolism Provides a Better Insight Into Fungal Flexibility in Using Plant Biomass-Derived Monomers as Substrates Frontiers in Bioengineering and Biotechnology ·Tania Chroumpi,Mao Peng,Lye Meng Markillie,Hugh Mitchell,Carrie Nicora,Chelsea Hutchinson,Vanessa Paurus,Nikola Tolić,Chaevien Clendinen,Galya Orr,Scott Baker,Miia Mäkelä,Ronald P. de Vries	2021	7
11	Subtoxic dose of lithium cobalt oxide nanosheets impacts critical molecular pathways in trout gill epithelial cells Environmental Science Nano ·Arielle C. Mensch,Hugh Mitchell,Lye Meng Markillie,Elizabeth D. Laudadio,Jenny Orbeck,Alice Dohnálková,Michael P. Schwartz,Robert J. Hamers,Galya Orr	2020	6
12	Rosette core fungal resistance in Arabidopsis thaliana Planta ·Yanwan Dai,Huw A. Ogilvie,Yuan Liu,Michael Huang,Lye Meng Markillie,Hugh Mitchell,Eli J. Borrego,Michael V. Kolomiets,Matthew Gaffrey,Galya Orr,E. Wassim Chehab,Wan‐Ting Mao,Janet Braam	2019	2
13	Reference genes for accurate normalization of gene expression in wood-decomposing fungi Fungal Genetics and Biology ·Jiwei Zhang,Hugh Mitchell,Lye Meng Markillie,Matthew Gaffrey,Galya Orr,Jonathan S. Schilling	2018	8
14	Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium PLoS ONE ·Roberto Orellana,Gina Chaput,Lye Meng Markillie,Hugh Mitchell,Matt Gaffrey,Galya Orr,Kristen M. DeAngelis	2017	13
15	Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach Frontiers in Microbiology ·Stephen R. Lindemann,Jennifer M. Mobberley,Jessica K. Cole,Lye Meng Markillie,Ronald C. Taylor,Eric Huang,William Chrisler,H Wiley,Mary Lipton,William Nelson,James K. Fredrickson,Margaret F. Romine	2017	42
16	Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus The ISME Journal ·Cristina Howard‐Varona,Simon Roux,Hugo Doré,Natalie Solonenko,Karin Holmfeldt,Lye Meng Markillie,Galya Orr,Matthew B. Sullivan	2016	42
17	Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142 Scientific Reports ·Hans C. Bernstein,Moiz A. Charania,Ryan McClure,Natalie Sadler,Matthew R. Melnicki,Eric A. Hill,Lye Meng Markillie,Carrie Nicora,Aaron Wright,Margaret F. Romine,Alexander S. Beliaev	2015	10
18	Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cyclingbreakdown → Current Biology ·Cindy J. Castelle,Kelly Wrighton,Brian C. Thomas,Laura Hug,Christopher T. Brown,Michael J. Wilkins,Kyle R. Frischkorn,Susannah G. Tringe,Andrea Singh,Lye Meng Markillie,Ronald C. Taylor,Kenneth H. Williams,Jillian F. Banfield	2015	392
19	Improved Method for Isolation of Microbial RNA from Biofuel Feedstock for Metatranscriptomics Advances in Microbiology ·Hailan Piao,Lye Meng Markillie,David Culley,Roderick I. Mackie,Matthias Hess	2013	2
20	Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics PLoS ONE ·Becky Hess,Junfeng Xue,Lye Meng Markillie,Ronald C. Taylor,H Wiley,Birgitte K. Ahring,Bryan Linggi	2013	27

About Lye Meng Markillie

Lye Meng Markillie is a scholar working on Structural Biology, Biophysics and Biotechnology, having authored 58 papers that have together received 2.1k indexed citations. Recurring topics across this work include Microbial Community Ecology and Physiology (9 papers), Enzyme-mediated dye degradation (5 papers), Single-cell and spatial transcriptomics (5 papers), Genomics and Phylogenetic Studies (5 papers), Photosynthetic Processes and Mechanisms (5 papers), Microbial Fuel Cells and Bioremediation (4 papers), Biofuel production and bioconversion (4 papers) and Protein Kinase Regulation and GTPase Signaling (3 papers). The work is most often cited by research in Ecology (621 citations), Parasitology (150 citations) and Environmental Chemistry (203 citations). Lye Meng Markillie has collaborated with scholars based in United States, Netherlands and Australia. Frequent co-authors include Ronald C. Taylor, Galya Orr, H Wiley, William Chrisler, Hugh Mitchell, Michael J. Wilkins, Bryan Linggi, Laura Hug, Brian C. Thomas and Christopher T. Brown. Their work appears in journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Communications.

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