Jonathan E. Henninger

3.5k citations

16 papers · 1.6k indexed · 3 hit papers · h-index 12

Impact in

Molecular Biology top 5%
- RNA Research and Splicing
- Genomics and Chromatin Dynamics
- RNA modifications and cancer
- RNA and protein synthesis mechanisms
- Epigenetics and DNA Methylation
- Nuclear Structure and Function
Hematology top 10%
- Acute Myeloid Leukemia Research

Papers in ⓘ

Molecular Biology 15
- Genomics and Chromatin Dynamics 7
- RNA Research and Splicing 7
- Single-cell and spatial transcriptomics 4
- RNA modifications and cancer 4
- RNA and protein synthesis mechanisms 3
- Epigenetics and DNA Methylation 2
Cell Biology 5
- Zebrafish Biomedical Research Applications 5

Co-authors: Richard A. Young (8 shared papers)Nancy M. Hannett (7 shared papers)Phillip A. Sharp (3 shared papers)Tong Ihn Lee (5 shared papers)Alicia V. Zamudio (3 shared papers)Ibrahim I. Cissé (3 shared papers)Krishna Shrinivas (2 shared papers)Ozgur Oksuz (4 shared papers)
Journals: Molecular Cell (3 papers)Nature (3 papers)Blood (2 papers)Nature Cell Biology (1 paper)Science (1 paper)
Partner nations: United States Netherlands Austria

In The Last Decade

Jonathan E. Henninger

16 papers receiving 1.6k citations

Hit Papers

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Transcription factors interact with RNA to regulate genes 2023 · 123 citations

Peers

Countries citing papers authored by Jonathan E. Henninger

Since Specialization

Citations

This map shows the geographic impact of Jonathan E. Henninger's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonathan E. Henninger with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonathan E. Henninger more than expected).

Fields of papers citing papers by Jonathan E. Henninger

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonathan E. Henninger. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonathan E. Henninger. The network helps show where Jonathan E. Henninger may publish in the future.

Co-authors

The 25 scholars most cited alongside Jonathan E. Henninger, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jonathan E. Henninger Line = papers co-authored together Jonathan E. Henninger links everyone, so they are left out of the graph.

All Works

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16 of 16 papers shown

#	Work
1	Pol II phosphorylation regulates a switch between transcriptional and splicing condensates Nature ·Yang Guo, John C. Manteiga, Jonathan E. Henninger, Benjamin R. Sabari, Alessandra Dall’Agnese, Nancy M. Hannett, Jan-Hendrik Spille, Lena K. Afeyan, Alicia V. Zamudio, Krishna Shrinivas, Brian J. Abraham, Ann Boija, Tim-Michael Decker, Jenna K. Rimel, Charli B. Fant, Tong Ihn Lee, Ibrahim I. Cissé, Phillip A. Sharp, Dylan J. Taatjes, Richard A. Young Hit paper breakdown →	2019	455
2	RNA-Mediated Feedback Control of Transcriptional Condensates Cell ·Jonathan E. Henninger, Ozgur Oksuz, Krishna Shrinivas, Ido Sagi, Gary LeRoy, Ming Zheng, J Owen Andrews, Alicia V. Zamudio, Charalampos Lazaris, Nancy M. Hannett, Tong Ihn Lee, Phillip A. Sharp, Ibrahim I. Cissé, Arup K. Chakraborty, Richard A. Young Hit paper breakdown →	2020	365
3	MeCP2 links heterochromatin condensates and neurodevelopmental disease Nature ·Charles H. Li, Eliot L. Coffey, Alessandra Dall’Agnese, Nancy M. Hannett, Xin Tang, Jonathan E. Henninger, Jesse M. Platt, Ozgur Oksuz, Alicia V. Zamudio, Lena K. Afeyan, Jurian Schuijers, X. Shawn Liu, Styliani Markoulaki, Tenzin Lungjangwa, Gary LeRoy, Devon S. Svoboda, Emile Wogram, Tong Ihn Lee, Rudolf Jaenisch, Richard A. Young	2020	146
4	Transcription factors interact with RNA to regulate genes Molecular Cell ·Ozgur Oksuz, Jonathan E. Henninger, Robert Warneford-Thomson, Ming Zheng, Hailey Erb, Adrienne Vancura, Kalon J. Overholt, Susana Wilson Hawken, Salman F. Banani, Richard Lauman, Lauren Reich, Anne L. Robertson, Nancy M. Hannett, Tong I. Lee, Leonard I. Zon, Roberto Bonasio, Richard A. Young Hit paper breakdown →	2023	123
5	Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis Science ·Serine Avagyan, Jonathan E. Henninger, William Mannherz, Meeta Mistry, Joon Yoon, Song Yang, M. Weber, Jessica L. Moore, Leonard I. Zon	2021	112
6	Clonal fate mapping quantifies the number of haematopoietic stem cells that arise during development Nature Cell Biology ·Jonathan E. Henninger, Buyung Santoso, Stefan Hans, Ellen M. Durand, Jessica L. Moore, Christian Mosimann, Michael Brand, David Traver, Leonard I. Zon	2016	80
7	RNA in formation and regulation of transcriptional condensates RNA ·Phillip A. Sharp, Arup K. Chakraborty, Jonathan E. Henninger, Richard A. Young	2021	70
8	Dynamic Enhancer DNA Methylation as Basis for Transcriptional and Cellular Heterogeneity of ESCs Molecular Cell ·Yuelin Song, Patrick R. van den Berg, Styliani Markoulaki, Frank Soldner, Alessandra Dall’Agnese, Jonathan E. Henninger, Jesse Drotar, Nicholas A. Rosenau, Malkiel A. Cohen, Richard A. Young, Stefan Semrau, Yonatan Stelzer, Rudolf Jaenisch	2019	68
9	Differential cofactor dependencies define distinct types of human enhancers Nature ·Christoph Neumayr, Vanja Haberle, Leonid Serebreni, Katharina Karner, Oliver Hendy, Ann Boija, Jonathan E. Henninger, Charles H. Li, Karel Stejskal, Gen Lin, Katharina Bergauer, Michaela Pagani, Martina Rath, Karl Mechtler, Cosmas D. Arnold, Alexander Stark	2022	55
10	Genetic variation associated with condensate dysregulation in disease Developmental Cell ·Salman F. Banani, Lena K. Afeyan, Susana Wilson Hawken, Jonathan E. Henninger, Alessandra Dall’Agnese, Victoria Clark, Jesse M. Platt, Ozgur Oksuz, Nancy M. Hannett, Ido Sagi, Tong Ihn Lee, Richard A. Young	2022	54
11	The dynamic clustering of insulin receptor underlies its signaling and is disrupted in insulin resistance Nature Communications ·Alessandra Dall’Agnese, Jesse M. Platt, Ming Zheng, Max Friesen, Giuseppe Dall’Agnese, Alyssa M. Blaise, Jessica B. Spinelli, Jonathan E. Henninger, Erin N. Tevonian, Nancy M. Hannett, Charalampos Lazaris, Hannah K. Drescher, Lea M. Bartsch, Henry R. Kilgore, Rudolf Jaenisch, Linda G. Griffith, Ibrahim I. Cissé, Jacob Jeppesen, Tong Ihn Lee, Richard A. Young	2022	33
12	Generation of mouse-zebrafish hematopoietic tissue chimeric embryos for hematopoiesis and host-pathogen interaction studies Disease Models & Mechanisms ·Margarita Parada-Kusz, Cristina Peñaranda, Elliott J. Hagedorn, Anne E. Clatworthy, Anil V. Nair, Jonathan E. Henninger, Christoph M. Ernst, Brian Li, Raquel Riquelme, Humberto Jijon, Eduardo J. Villablanca, Leonard I. Zon, Deborah T. Hung, Miguel L. Allende	2018	11
13	An RNA-centric view of transcription and genome organization Molecular Cell ·Jonathan E. Henninger, Richard A. Young	2024	10
14	Correlative Lightsheet and Electron Microscopy Applied to a Zebrafish Model of Fetal Bone Marrow: Resolving the Ultrastructure of a Single Hematopoietic Stem Cell in the Niche Blood ·Sobhika Agarwala, Keunyoung Kim, Eric A. Bushong, Mark H. Ellisman, Jonathan E. Henninger, Leonard I. Zon, Owen J. Tamplin	2017	1
15	APE1 condensation in nucleoli of non-cancer cells depends on rRNA transcription and forming G-quadruplex RNA structures Nucleic Acids Research ·Giuseppe Dall’Agnese, Nancy M. Hannett, Kalon J. Overholt, Jesse M. Platt, Jonathan E. Henninger, Asier Marcos-Vidal, Zulhabri Othman, Gilmar F. Salgado, Giulia Antoniali, Gianluca Tell	2025	1
16	Modeling Clonal Hematopoietic Disorders in Zebrafish Using Color Barcoding Blood ·Serine Avagyan, Jonathan E. Henninger, Jessica L. Moore, William Mannherz, Leonard I. Zon	2016	1

About Jonathan E. Henninger

Jonathan E. Henninger is a scholar working on Molecular Biology, Cell Biology, Hematology, Immunology and Surgery, having authored 16 papers that have together received 1.6k indexed citations. Recurring topics across this work include Genomics and Chromatin Dynamics (7 papers), RNA Research and Splicing (7 papers), Zebrafish Biomedical Research Applications (5 papers), Single-cell and spatial transcriptomics (4 papers), RNA modifications and cancer (4 papers), RNA and protein synthesis mechanisms (3 papers), Acute Myeloid Leukemia Research (2 papers) and Epigenetics and DNA Methylation (2 papers). The work is most often cited by research in Molecular Biology (1.4k citations), Hematology (122 citations), Cancer Research (132 citations), Cell Biology (113 citations) and Biophysics (32 citations). Jonathan E. Henninger has collaborated with scholars based in United States, Netherlands and Austria. Frequent co-authors include Richard A. Young, Nancy M. Hannett, Phillip A. Sharp, Tong Ihn Lee, Alicia V. Zamudio, Ibrahim I. Cissé, Krishna Shrinivas, Ozgur Oksuz, Arup K. Chakraborty and Alessandra Dall’Agnese. Their work appears in journals such as Molecular Cell, Nature, Blood, Nature Cell Biology and Science.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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