Heidi J. Sofia

101.3k citations

24 papers · 2.5k indexed · 1 hit paper · h-index 13

Impact in

Renewable Energy, Sustainability and the Environment top 5%
- Metalloenzymes and iron-sulfur proteins
Endocrinology top 5%

Papers in ⓘ

Molecular Biology 17
- Genomics and Phylogenetic Studies 5
- Bioinformatics and Genomic Networks 5
- Biomedical Text Mining and Ontologies 3
Genetics 8
- Bacterial Genetics and Biotechnology 5

Co-authors: Donna L. Daniels (3 shared papers)Valerie Burland (3 shared papers)Guy Plunkett (3 shared papers)Walter G. Zumft (1 shared paper)Heinz Körner (1 shared paper)Frederick R. Blattner (1 shared paper)Thorsten Mascher (1 shared paper)Luke E. Ulrich (1 shared paper)
Journals: Nucleic Acids Research (4 papers)Molecular Microbiology (1 paper)Cancer Research (1 paper)FEMS Microbiology Reviews (1 paper)BMC Bioinformatics (1 paper)
Partner nations: United States Canada Germany

In The Last Decade

Heidi J. Sofia

23 papers receiving 2.4k citations

Hit Papers

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Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods 2001 · 807 citations

Peers

Countries citing papers authored by Heidi J. Sofia

Since Specialization

Citations

This map shows the geographic impact of Heidi J. Sofia's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Heidi J. Sofia with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Heidi J. Sofia more than expected).

Fields of papers citing papers by Heidi J. Sofia

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Heidi J. Sofia. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Heidi J. Sofia. The network helps show where Heidi J. Sofia may publish in the future.

Co-authors

The 25 scholars most cited alongside Heidi J. Sofia, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Heidi J. Sofia Line = papers co-authored together Heidi J. Sofia links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

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#	Work
1	Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods Nucleic Acids Research ·Heidi J. Sofia Hit paper breakdown →	2001	807
2	Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs FEMS Microbiology Reviews ·Heinz Körner, Heidi J. Sofia, Walter G. Zumft	2003	354
3	Analysis of theEscherichia coligenome. V. DNA sequence of the region from 76.0 to 81.5 minutes Nucleic Acids Research ·Heidi J. Sofia, Valerie Burland, Donna L. Daniels, Guy Plunkett, Frederick R. Blattner	1994	352
4	The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) σ factor protein family Molecular Microbiology ·Anna Staroń, Heidi J. Sofia, Sascha Dietrich, Luke E. Ulrich, Heiko Liesegang, Thorsten Mascher	2009	313
5	Analysis of theEscherichia coligenome VI: DNA sequence of the region from 92.8 through 100 minutes Nucleic Acids Research ·Valerie Burland, Guy Plunkett, Heidi J. Sofia, Donna L. Daniels, F. R. Blattner	1995	134
6	A Conserved Structural Module Regulates Transcriptional Responses to Diverse Stress Signals in Bacteria Molecular Cell ·Elizabeth A. Campbell, Roger Greenwell, Jennifer R. Anthony, Sheng Wang, Lionel Lim, Kalyan Das, Heidi J. Sofia, Timothy J. Donohue, Seth A. Darst	2007	122
7	Analysis of theEscherichia coligenome. IV. DNA sequence of the region from 89.2 to 92.8 minutes Nucleic Acids Research ·Frederick R. BIattner, Valerie Burland, Guy Plunkett, Heidi J. Sofia, Donna L. Daniels	1993	108
8	A new family of peptidyl-prolyl isomerases Trends in Biochemical Sciences ·Kenneth E. Rudd, Heidi J. Sofia, Eugene V. Koonin, Gup Plunkett, Sara W. Lazar, Pierre E. Rouvière	1995	78
9	Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks Journal of the American Medical Informatics Association ·Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, Knox Carey, David Lloyd, Heidi J. Sofia, Dixie B. Baker, Paul Flicek, Suyash Shringarpure, Carlos D. Bustamante, Shuang Wang, Xiaoqian Jiang, Lucila Ohno‐Machado, Haixu Tang, Xiaofeng Wang, Jean‐Pierre Hubaux	2016	61
10	μ-Amyloid Peptide-induced Apoptosis Regulated by a Novel Protein Containing a G Protein Activation Module Journal of Biological Chemistry ·Eileen M. Kajkowski, Cody Lo, Xiaoping Ning, Stephen Walker, Heidi J. Sofia, Weiye Wang, Wade Edris, Pranab K. Chanda, Erik Wagner, Stacey Vile, Kevin M. Ryan, Barbara McHendry‐Rinde, Stanley C. Smith, Andrew Wood, Kenneth J. Rhodes, Jeffrey D. Kennedy, Jonathan Bard, J. Steven Jacobsen, Bradley A. Ozenberger	2001	48
11	Protecting genomic data analytics in the cloud: state of the art and opportunities BMC Medical Genomics ·Haixu Tang, Xiaoqian Jiang, XiaoFeng Wang, Shuang Wang, Heidi J. Sofia, Dov Fox, Kristin Lauter, Bradley Malin, Amalio Telenti, Li Xiong, Lucila Ohno‐Machado	2016	37
12	A community effort to protect genomic data sharing, collaboration and outsourcing npj Genomic Medicine ·Shuang Wang, Xiaoqian Jiang, Haixu Tang, Xiaofeng Wang, Diyue Bu, Knox Carey, Stephanie O. M. Dyke, Dov Fox, Chao Jiang, Kristin Lauter, Bradley Malin, Heidi J. Sofia, Amalio Telenti, Lei Wang, Wenhao Wang, Lucila Ohno‐Machado	2017	28
13	BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment BMC Bioinformatics ·George Chin, Daniel G. Chavarria, Grant Nakamura, Heidi J. Sofia	2008	13
14	Simplifying research access to genomics and health data with Library Cards Scientific Data ·Moran N. Cabili, Knox Carey, Stephanie O. M. Dyke, Anthony J. Brookes, Marc Fiume, Francis Jeanson, Giselle Kerry, Alex Lash, Heidi J. Sofia, Dylan Spalding, Anne-Marie Tassé, S.D. Varma, Ravi Pandya	2018	8
15	A Dynamic Multiscale Magnifying Tool for Exploring Large Sparse Graphs Information Visualization ·Pak Chung Wong, H.P. Foote, Patrick Mackey, George Chin, Heidi J. Sofia, Jim Thomas	2008	7
16	A High-Performance Computational Framework for BionetworkAnalysis George Chin, Daniel G. Chavarria, Grant Nakamura, Heidi J. Sofia	2007	3
17	Abstract 926: Multi-Center Mutation Calling in Multiple Cancers: The MC3 Project Cancer Research ·Kyle Ellrott, Mathew Bailey, Gordon Saksena, Kyle R. Covington, Cyriac Kandoth, Chip Stewart, Michael D. McLellan, Heidi J. Sofia, Carolyn M. Hutter, Gad Getz, David A. Wheeler, Li Ding	2018	3
18	Graph Mining of Networks from Genome Biology George Chin, Grant Nakamura, Daniel G. Chavarria, Heidi J. Sofia	2007	3
19	Backbone 1H, 13C, and 15N NMR assignments for the Cyanothece 51142 protein cce_0567: a protein associated with nitrogen fixation in the DUF683 family Biomolecular NMR Assignments ·Garry W. Buchko, Heidi J. Sofia	2007	2
20	Supporting Computational Visual Theories in Biology G. Chin, Eric Stephan, Kyle R. Klicker, Abigail Corrigan, Heidi J. Sofia	2005	2

About Heidi J. Sofia

Heidi J. Sofia is a scholar working on Molecular Biology, Genetics, Ecology, Artificial Intelligence and Public Health, Environmental and Occupational Health, having authored 24 papers that have together received 2.5k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (5 papers), Bacterial Genetics and Biotechnology (5 papers), Bioinformatics and Genomic Networks (5 papers), Cancer Genomics and Diagnostics (4 papers), Ethics in Clinical Research (4 papers), Bacteriophages and microbial interactions (3 papers), Scientific Computing and Data Management (3 papers) and Biomedical Text Mining and Ontologies (3 papers). The work is most often cited by research in Renewable Energy, Sustainability and the Environment (581 citations), Endocrinology (140 citations), Genetics (629 citations), Molecular Biology (1.5k citations) and Biochemistry (125 citations). Heidi J. Sofia has collaborated with scholars based in United States, Canada and Germany. Frequent co-authors include Donna L. Daniels, Valerie Burland, Guy Plunkett, Walter G. Zumft, Heinz Körner, Frederick R. Blattner, Thorsten Mascher, Luke E. Ulrich, Sascha Dietrich and Anna Staroń. Their work appears in journals such as Nucleic Acids Research, Molecular Microbiology, Cancer Research, FEMS Microbiology Reviews and BMC Bioinformatics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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