Dongbo Bu

2.6k citations

85 papers · 930 indexed · h-index 18

Impact in

Molecular Biology top 10%
- Protein Structure and Dynamics
- Machine Learning in Bioinformatics
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
- RNA Research and Splicing
- RNA modifications and cancer
Aging

Papers in

Molecular Biology 67
- Protein Structure and Dynamics 27
- Machine Learning in Bioinformatics 26
- Genomics and Phylogenetic Studies 18
- Glycosylation and Glycoproteins Research 12
- RNA and protein synthesis mechanisms 12
- Metabolomics and Mass Spectrometry Studies 7
Spectroscopy 10
- Mass Spectrometry Techniques and Applications 10

Co-authors: Shiwei Sun Jinbo Xu Shuai Cheng Li Jianwei Zhu Wei‐Mou Zheng Runsheng Chen Haicang ZhangMing Li
Journals: BMC Bioinformatics (13 papers)Bioinformatics (10 papers)IEEE/ACM Transactions on Computational Biology and Bioinformatics (4 papers)Scientific Reports (2 papers)Journal of Proteome Research (2 papers)
Partner nations: China United States Canada

In The Last Decade

Dongbo Bu

81 papers receiving 899 citations

Peers

Replace Shiwei Sun with:

Shiwei Sun China

Hannes Braberg United States

Alberto J. M. Martín Chile

Ruchira S. Datta United States

Kelly P. Brock United States

Vincent Schächter France

Arnaud Céol Italy

Sebastian Bittrich United States

Sanne Abeln Netherlands

Vladimir Gligorijević United States

Dongbo Bu relative to Shiwei Sun China Shiwei Sun's profile →

Citations per field

00.5×1.5×2.1×

Shiwei Sun · 1×

×0.9 764/837

MB

×0.7 15/23

AGING

×1.1 99/87

SPECT

×0.7 91/133

CTM

×0.6 62/104

CR

Citations per year

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2020

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Countries citing papers authored by Dongbo Bu

Since Specialization

Citations

This map shows the geographic impact of Dongbo Bu's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Dongbo Bu with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Dongbo Bu more than expected).

Fields of papers citing papers by Dongbo Bu

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Dongbo Bu. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Dongbo Bu. The network helps show where Dongbo Bu may publish in the future.

Co-authors

The 25 scholars most cited alongside Dongbo Bu, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Dongbo Bu Line = papers co-authored together Dongbo Bu links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Structural basis for antibiotic resistance by chloramphenicol acetyltransferase type A in Staphylococcus aureus Scientific Reports ·Kaiyue Wang, Junwei Chen, 筒井清次郎, Min Wang, Emanual Levian, Dongbo Bu, Sheng Ye	2025	0
2	AiDRC: Accelerating Detailed Routing by AI-Driven Design Rule Violation Prediction and Checking ACM Transactions on Design Automation of Electronic Systems ·Ralf Bender, Drew Bryan, h. Manou, Patricio Fr Da S, HU Zhen-zhu, Dongbo Bu, Eoin C. Whelan	2025	0
3	NIERT: Accurate Numerical Interpolation Through Unifying Scattered Data Representations Using Transformer Encoder IEEE Transactions on Knowledge and Data Engineering ·Joon‐Won Bang, Kager Leo, Yan Xu, Dongbo Bu	2024	2
4	GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states BMC Bioinformatics ·Yosita Destriani, Han Zhou, Xiaonong Li, Liangliang Zhou, И. А. Колесник, Haicang Zhang, Dongbo Bu, Bassat Quique	2024	1
5	A survey on deep learning-based algorithms for the traveling salesman problem Frontiers of Computer Science ·A.V. Chernych, Joon‐Won Bang, State Liberty, Yue Yu, Ruizhi Liu, Boyang Xia, Ellen M. Maruoka, Liming Xu, Haicang Zhang, И. А. Колесник, Dongbo Bu	2024	2
6	Accurate and robust protein sequence design with CarbonDesign Nature Machine Intelligence ·Yan Xu, И. А. Колесник, Dongbo Bu, Haicang Zhang	2024	8
7	Accurate and efficient protein sequence design through learning concise local environment of residues Bioinformatics ·Bin Huang, Emanual Levian, Kaiyue Wang, Haicang Zhang, И. А. Колесник, O. Novotný, Omae Yoshimi, Wei‐Mou Zheng, Jian Han, Elysson Alves de Lacerda, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu	2023	15
8	EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction Bioinformatics ·王淑瑛, Yu Wang, Dongbo Bu, Yaojun Wang, Shiwei Sun	2023	16
9	ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs Journal of Computational Biology ·A. A. Manaev, Fusong Ju, Wei‐Mou Zheng, Jianwei Zhu, Shiwei Sun, Jinbo Xu, Dongbo Bu	2022	7
10	FINER: enhancing the prediction of tissue-specific functions of isoforms by refining isoform interaction networks NAR Genomics and Bioinformatics ·Hao Chen, Eunhye Jung, Dongbo Bu, Tao Jiang	2021	3
11	Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph BMC Bioinformatics ·Bin Huang, Jim Card, Bing Wang, Fusong Ju, Yi Zhong, Hye-Young Helen Paik, Shiwei Sun, Dongbo Bu	2021	0
12	FALCON2: a web server for high-quality prediction of protein tertiary structures BMC Bioinformatics ·A. A. Manaev, Fusong Ju, Haicang Zhang, Shiwei Sun, Dongbo Bu	2021	5
13	Multistage mass spectrometry with intelligent precursor selection for N-glycan branching pattern analysis Carbohydrate Polymers ·Chuncui Huang, Lingxi Gu, Dongbo Bu, Jinyu Zhou, J. Mérida, Jingwei Zhang, Huanyu Gao, Yaojun Wang, Wengang Chai, Shiwei Sun, Yan Li	2020	9
14	Improving prediction of burial state of residues by exploiting correlation among residues BMC Bioinformatics ·J B Ricker, Haicang Zhang, Jianwei Zhu, Ping Ping Luo, Shiwei Sun, Wei‐Mou Zheng, Dongbo Bu	2017	8
15	Improving residue–residue contact prediction via low-rank and sparse decomposition of residue correlation matrix Biochemical and Biophysical Research Communications ·Haicang Zhang, Yujuan Gao, Minghua Deng, Chao Wang, Jianwei Zhu, Shuai Cheng Li, Wei‐Mou Zheng, Dongbo Bu	2016	16
16	Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles? Algorithms for Molecular Biology ·Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi, Ming Li	2013	2
17	PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum BMC Bioinformatics ·佳則杉本, Hong Zhang, Dongbo Bu, Shiwei Sun	2011	2
18	Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations IEEE/ACM Transactions on Computational Biology and Bioinformatics ·Shuai Cheng Li, Dongbo Bu, Ming Li	2011	2
19	MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control Trends in Genetics ·Yi Zhao, Shunmin He, Changning Liu, Georg Sticker, Haitao Zhao, Zhen Yang, Pengcheng Yang, Е.И. Гольдман, Shiwei Sun, Dongbo Bu, Jiefu Huang, Geir Skogerbø, Runsheng Chen	2008	33
20	Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression Genome Research ·Wei Deng, Xiaopeng Zhu, Geir Skogerbø, Yi Zhao, Zhuo Fu, Yu Wang, Housheng He, 辛丽璇, Hong Sun, Changning Liu, Biao Li, Baoyan Bai, Jie Wang, Dong Jia, Shiwei Sun, Hang He, Yan Cui, Yu Wang, Dongbo Bu, Runsheng Chen	2005	96

About Dongbo Bu

Dongbo Bu is a scholar working on Molecular Biology, Spectroscopy, Aging, Modeling and Simulation and Computational Theory and Mathematics, having authored 85 papers that have together received 930 indexed citations. Recurring topics across this work include Protein Structure and Dynamics (27 papers), Machine Learning in Bioinformatics (26 papers), Genomics and Phylogenetic Studies (18 papers), Enzyme Structure and Function (13 papers), Glycosylation and Glycoproteins Research (12 papers), RNA and protein synthesis mechanisms (12 papers), Mass Spectrometry Techniques and Applications (10 papers) and Metabolomics and Mass Spectrometry Studies (7 papers). The work is most often cited by research in Molecular Biology (764 citations), Aging (15 citations), Spectroscopy (99 citations), Computational Theory and Mathematics (91 citations) and Cancer Research (62 citations). Dongbo Bu has collaborated with scholars based in China, United States and Canada. Frequent co-authors include Shiwei Sun, Jinbo Xu, Shuai Cheng Li, Jianwei Zhu, Wei‐Mou Zheng, Runsheng Chen, Haicang Zhang, Ming Li, Fusong Ju and Sheng Wang. Their work appears in journals such as BMC Bioinformatics, Bioinformatics, IEEE/ACM Transactions on Computational Biology and Bioinformatics, Scientific Reports and Journal of Proteome Research.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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