Ali Bashir

10.0k citations

45 papers · 1.6k indexed · h-index 22

Impact in

Molecular Medicine top 5%
- Antibiotic Resistance in Bacteria
Genetics top 5%
- Genomic variations and chromosomal abnormalities
- Genomics and Rare Diseases

Papers in ⓘ

Genetics 19
- Genomic variations and chromosomal abnormalities 10
- Genomics and Rare Diseases 6
- BRCA gene mutations in cancer 4
Cancer Research 7
- Cancer Genomics and Diagnostics 6

Co-authors: Vineet Bafna (8 shared papers)Benjamin J. Raphael (6 shared papers)Suzanne Sindi (2 shared papers)Elena Helman (1 shared paper)Steven H. Itzkowitz (2 shared papers)Inga Peter (2 shared papers)Jianzhong Hu (2 shared papers)Vikas Bansal (3 shared papers)
Journals: Bioinformatics (8 papers)Genome Research (3 papers)BMC Medical Genomics (2 papers)Computers, materials & continua/Computers, materials & continua (Print) (2 papers)Nature Communications (2 papers)
Partner nations: United States United Kingdom India

In The Last Decade

Ali Bashir

44 papers receiving 1.5k citations

Peers

Countries citing papers authored by Ali Bashir

Since Specialization

Citations

This map shows the geographic impact of Ali Bashir's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ali Bashir with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ali Bashir more than expected).

Fields of papers citing papers by Ali Bashir

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ali Bashir. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ali Bashir. The network helps show where Ali Bashir may publish in the future.

Co-authors

The 25 scholars most cited alongside Ali Bashir, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Ali Bashir Line = papers co-authored together Ali Bashir links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 45 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Diversified Microbiota of Meconium Is Affected by Maternal Diabetes Status PLoS ONE ·Jianzhong Hu, Yoko Nomura, Ali Bashir, Heriberto Fernandez-Hernandez, Steven H. Itzkowitz, Zhiheng Pei, James L. Stone, Holly Loudon, Inga Peter	2013	175
2	A geometric approach for classification and comparison of structural variants Bioinformatics ·Suzanne Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael	2009	124
3	Genome Sequencing of an Extended Series of NDM-Producing Klebsiella pneumoniae Isolates from Neonatal Infections in a Nepali Hospital Characterizes the Extent of Community- versus Hospital-Associated Transmission in an Endemic Setting Antimicrobial Agents and Chemotherapy ·Nicole Stoesser, Adam Giess, Elizabeth M. Batty, Anna E. Sheppard, A. Sarah Walker, Daniel J. Wilson, Xavier Didelot, Ali Bashir, Robert Sebra, Andrew Kasarskis, B. R. Sthapit, Mila Shakya, Dominic F. Kelly, Andrew J. Pollard, Tim Peto, Derrick W. Crook, Peter Donnelly, Stephen Thorson, Puja Amatya, S. Joshi	2014	103
4	Machine learning guided aptamer refinement and discovery Nature Communications ·Ali Bashir, Qin Yang, Jinpeng Wang, Stephan Hoyer, Wen-Chuan Chou, Cory Y. McLean, Geoff Davis, Qiang Gong, Zan Armstrong, Junghoon Jang, Hui Kang, Annalisa Pawlosky, Alexander P. Scott, George E. Dahl, Marc Berndl, Michelle Dimon, B. Scott Ferguson	2021	97
5	Conserved Noncoding Sequences in the Grasses4 Genome Research ·Dan Choffnes Inada, Ali Bashir, Chunghau Lee, Brian C. Thomas, Cynthia Ko, Stephen A. Goff, Michael Freeling	2003	91
6	Experimental selection of hypoxia-tolerant Drosophila melanogaster Proceedings of the National Academy of Sciences ·Dan Zhou, Nitin Udpa, Merril Gersten, DeeAnn Visk, Ali Bashir, Jin Xue, Kelly A. Frazer, James W. Posakony, Shankar Subramaniam, Vineet Bafna, Gabriel G. Haddad	2011	82
7	Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering Microbiome ·Oscar Franzén, Jianzhong Hu, Xiuliang Bao, Steven H. Itzkowitz, Inga Peter, Ali Bashir	2015	72
8	A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus Frontiers in Immunology ·Oscar L. Rodriguez, William S. Gibson, Tom Parks, Matthew Emery, James Powell, Maya Strahl, Gintaras Deikus, Kathryn Auckland, Evan E. Eichler, Wayne A. Marasco, Robert Sebra, Andrew J. Sharp, Melissa Smith, Ali Bashir, Corey T. Watson	2020	63
9	Evidence for large inversion polymorphisms in the human genome from HapMap data Genome Research ·Vikas Bansal, Ali Bashir, Vineet Bafna	2006	61
10	Hepatitis C virus genetics affects miR-122 requirements and response to miR-122 inhibitors Nature Communications ·Benjamin Israelow, Gavriel Mullokandov, Judith Agudo, Marion Sourisseau, Ali Bashir, Andres Y. Maldonado, Arvin C. Dar, Brian D. Brown, Matthew J. Evans	2014	57
11	Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer PLoS Computational Biology ·Ali Bashir, Stanislav Volik, Colin C. Collins, Vineet Bafna, Benjamin J. Raphael	2008	55
12	Resolving complex tandem repeats with long reads Bioinformatics ·Ajay Ummat, Ali Bashir	2014	49
13	Genome Plasticity of agr -Defective Staphylococcus aureus during Clinical Infection Infection and Immunity ·Deena R. Altman, Mitchell J. Sullivan, Kieran Chacko, Divya Balasubramanian, Theodore R. Pak, William E. Sause, Krishan Kumar, Robert Sebra, Gintaras Deikus, Oliver Attie, Hannah R. Rose, M. E. Suzanne Lewis, Yi Fulmer, Ali Bashir, Andrew Kasarskis, Eric E. Schadt, Anthony R. Richardson, Victor J. Torres, Bo Shopsin, Harm van Bakel	2018	46
14	Characterization of structural variants with single molecule and hybrid sequencing approaches Bioinformatics ·Anna Ritz, Ali Bashir, Suzanne Sindi, D. Frank Hsu, Iman Hajirasouliha, Benjamin J. Raphael	2014	42
15	Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing Bioinformatics ·Volkan Sevi̇m, Ali Bashir, Chen-Shan Chin, Karen H. Miga	2016	37
16	Transmission of Methicillin-Resistant Staphylococcus aureus via Deceased Donor Liver Transplantation Confirmed by Whole Genome Sequencing American Journal of Transplantation ·Deena R. Altman, Robert Sebra, Jonathan Hand, Oliver Attie, Gintaras Deikus, Kristin W. Delli Carpini, Gopi Patel, Meenakshi Rana, Antonios Arvelakis, Paul Grewal, Jayeeta Dutta, Hannah R. Rose, Bo Shopsin, Simon Daefler, Eric E. Schadt, Andrew Kasarskis, Harm van Bakel, Ali Bashir, Shirish Huprikar	2014	34
17	Orthologous repeats and mammalian phylogenetic inference Genome Research ·Ali Bashir, Chun Ye, Alkes L. Price, Vineet Bafna	2005	29
18	Longitudinal fundus imaging and its genome-wide association analysis provide evidence for a human retinal aging clock eLife ·Sara Ahadi, Kenneth A. Wilson, Boris Babenko, Cory Y. McLean, Drew Bryant, Orion Pritchard, Ajay Kumar, Enrique M. Carrera, Ricardo Lamy, Jay M. Stewart, Avinash V. Varadarajan, Marc Berndl, Pankaj Kapahi, Ali Bashir	2023	26
19	Informed decision-making among students analyzing their personal genomes on a whole genome sequencing course: a longitudinal cohort study Genome Medicine ·Saskia C. Sanderson, Michael D. Linderman, Andrew Kasarskis, Ali Bashir, George A. Díaz, Milind Mahajan, Hardik Shah, Melissa Wasserstein, Randi E. Zinberg, Micol Zweig, Eric E. Schadt	2013	24
20	Structural variation analysis with strobe reads Bioinformatics ·Anna Ritz, Ali Bashir, Benjamin J. Raphael	2010	24

About Ali Bashir

Ali Bashir is a scholar working on Genetics, Cancer Research, Molecular Biology, Clinical Biochemistry and Infectious Diseases, having authored 45 papers that have together received 1.6k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (14 papers), Genomic variations and chromosomal abnormalities (10 papers), Cancer Genomics and Diagnostics (6 papers), Genomics and Rare Diseases (6 papers), BRCA gene mutations in cancer (4 papers), Genetics, Bioinformatics, and Biomedical Research (4 papers), Molecular Biology Techniques and Applications (4 papers) and Mycobacterium research and diagnosis (4 papers). The work is most often cited by research in Molecular Medicine (111 citations), Genetics (445 citations), Endocrinology (74 citations), Molecular Biology (962 citations) and Cancer Research (137 citations). Ali Bashir has collaborated with scholars based in United States, United Kingdom and India. Frequent co-authors include Vineet Bafna, Benjamin J. Raphael, Suzanne Sindi, Elena Helman, Steven H. Itzkowitz, Inga Peter, Jianzhong Hu, Vikas Bansal, Ajay Ummat and Andrew Kasarskis. Their work appears in journals such as Bioinformatics, Genome Research, BMC Medical Genomics, Computers, materials & continua/Computers, materials & continua (Print) and Nature Communications.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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