Alfonso Jaramillo

2.6k total citations
85 papers, 1.7k citations indexed

About

Alfonso Jaramillo is a scholar working on Molecular Biology, Genetics and Ecology. According to data from OpenAlex, Alfonso Jaramillo has authored 85 papers receiving a total of 1.7k indexed citations (citations by other indexed papers that have themselves been cited), including 75 papers in Molecular Biology, 22 papers in Genetics and 14 papers in Ecology. Recurrent topics in Alfonso Jaramillo's work include RNA and protein synthesis mechanisms (30 papers), CRISPR and Genetic Engineering (27 papers) and Gene Regulatory Network Analysis (27 papers). Alfonso Jaramillo is often cited by papers focused on RNA and protein synthesis mechanisms (30 papers), CRISPR and Genetic Engineering (27 papers) and Gene Regulatory Network Analysis (27 papers). Alfonso Jaramillo collaborates with scholars based in France, Spain and United Kingdom. Alfonso Jaramillo's co-authors include Guillermo Rodrigo, Javier Carrera, Thomas E. Landrain, Shoshana J. Wodak, Santiago F. Elena, María Suárez‐Diez, Andreas K. Brödel, Mark Isalan, Kristala Jones Prather and Lorenz Wernisch and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Journal of Biological Chemistry.

In The Last Decade

Alfonso Jaramillo

85 papers receiving 1.6k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Alfonso Jaramillo France 24 1.4k 317 196 193 125 85 1.7k
Nicolas Joly United Kingdom 24 1.6k 1.2× 674 2.1× 146 0.7× 293 1.5× 110 0.9× 52 2.1k
Zachary Z. Sun United States 9 2.3k 1.7× 601 1.9× 77 0.4× 222 1.2× 335 2.7× 16 2.6k
Ilan Wapinski United States 15 1.6k 1.1× 522 1.6× 337 1.7× 237 1.2× 56 0.4× 38 2.0k
Jean Vandenhaute Belgium 28 2.7k 2.0× 255 0.8× 298 1.5× 171 0.9× 222 1.8× 50 3.5k
Alon Zaslaver Israel 22 2.2k 1.6× 1.1k 3.3× 148 0.8× 216 1.1× 134 1.1× 37 3.0k
Vahid Shahrezaei United Kingdom 24 1.9k 1.4× 538 1.7× 84 0.4× 69 0.4× 137 1.1× 56 2.3k
Barbara Di Ventura Germany 16 1.0k 0.7× 219 0.7× 289 1.5× 60 0.3× 139 1.1× 37 1.3k
Jonghyeon Shin United States 12 1.7k 1.2× 374 1.2× 54 0.3× 153 0.8× 358 2.9× 15 1.9k
Chunbo Lou China 19 1.5k 1.1× 342 1.1× 102 0.5× 82 0.4× 257 2.1× 51 1.8k
Stephen A. Chervitz United States 13 1.3k 0.9× 562 1.8× 157 0.8× 144 0.7× 54 0.4× 16 1.6k

Countries citing papers authored by Alfonso Jaramillo

Since Specialization
Citations

This map shows the geographic impact of Alfonso Jaramillo's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Alfonso Jaramillo with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Alfonso Jaramillo more than expected).

Fields of papers citing papers by Alfonso Jaramillo

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Alfonso Jaramillo. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Alfonso Jaramillo. The network helps show where Alfonso Jaramillo may publish in the future.

Co-authorship network of co-authors of Alfonso Jaramillo

This figure shows the co-authorship network connecting the top 25 collaborators of Alfonso Jaramillo. A scholar is included among the top collaborators of Alfonso Jaramillo based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Alfonso Jaramillo. Alfonso Jaramillo is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Jaramillo, Alfonso, Filipe Pinto, Cecilia Faraloni, et al.. (2025). Outlook on Synthetic Biology-Driven Hydrogen Production: Lessons from Algal Photosynthesis Applied to Cyanobacteria. Energy & Fuels. 39(11). 4987–5006. 14 indexed citations
2.
Jaramillo, Alfonso, et al.. (2024). T7 phage-assisted evolution of riboswitches using error-prone replication and dual selection. Scientific Reports. 14(1). 2377–2377. 2 indexed citations
3.
Jaramillo, Alfonso, et al.. (2022). Growth‐dependent heterogeneity in the DNA damage response in Escherichia coli. Molecular Systems Biology. 18(5). e10441–e10441. 15 indexed citations
4.
Camsund, Daniel, Alfonso Jaramillo, & Peter Lindblad. (2021). Engineering of a Promoter Repressed by a Light-Regulated Transcription Factor in Escherichia coli. SHILAP Revista de lepidopterología. 2021. 9857418–9857418. 8 indexed citations
5.
Duncan, John, et al.. (2020). Comparison of CRISPR and Marker-Based Methods for the Engineering of Phage T7. Viruses. 12(2). 193–193. 21 indexed citations
6.
Galizi, Roberto, et al.. (2020). Engineered RNA-Interacting CRISPR Guide RNAs for Genetic Sensing and Diagnostics. The CRISPR Journal. 3(5). 398–408. 16 indexed citations
7.
Lepore, Alessia, Dirk Landgraf, Burak Okumuş, et al.. (2019). Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy. Scientific Reports. 9(1). 7902–7902. 24 indexed citations
8.
Shimizu, Yoshihiro, Jérôme Robert, Alfonso Jaramillo, et al.. (2018). Quantitative Characterization of Translational Riboregulators Using an in Vitro Transcription–Translation System. ACS Synthetic Biology. 7(5). 1269–1278. 12 indexed citations
9.
Galizi, Roberto & Alfonso Jaramillo. (2018). Engineering CRISPR guide RNA riboswitches for in vivo applications. Current Opinion in Biotechnology. 55. 103–113. 24 indexed citations
10.
Shen, Shensi, Guillermo Rodrigo, Satya Prakash, et al.. (2015). Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression. Nucleic Acids Research. 43(10). 5158–5170. 26 indexed citations
11.
Rodrigo, Guillermo, Eszter Majer, Satya Prakash, et al.. (2015). Exploring the Dynamics and Mutational Landscape of Riboregulation with a Minimal Synthetic Circuit in Living Cells. Biophysical Journal. 109(5). 1070–1076. 6 indexed citations
12.
13.
Rodrigo, Guillermo, Javier Carrera, & Alfonso Jaramillo. (2011). Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors. Nucleic Acids Research. 39(20). e138–e138. 34 indexed citations
14.
Camsund, Daniel, Peter Lindblad, & Alfonso Jaramillo. (2011). Genetically engineered light sensors for control of bacterial gene expression. Biotechnology Journal. 6(7). 826–836. 13 indexed citations
15.
Carrera, Javier, Guillermo Rodrigo, & Alfonso Jaramillo. (2009). Towards the automated engineering of a synthetic genome. Molecular BioSystems. 5(7). 733–743. 12 indexed citations
16.
Carrera, Javier, Guillermo Rodrigo, & Alfonso Jaramillo. (2009). Model-based redesign of global transcription regulation. Nucleic Acids Research. 37(5). e38–e38. 24 indexed citations
17.
Landrain, Thomas E., et al.. (2009). Modular model-based design for heterologous bioproduction in bacteria. Current Opinion in Biotechnology. 20(3). 272–279. 13 indexed citations
18.
Carrera, Javier, Guillermo Rodrigo, Alfonso Jaramillo, & Santiago F. Elena. (2009). Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions. Genome biology. 10(9). R96–R96. 54 indexed citations
19.
Noirel, Josselin, Saw Yen Ow, Guido Sanguinetti, Alfonso Jaramillo, & Phillip C. Wright. (2008). Automated extraction of meaningful pathways from quantitative proteomics data. Briefings in Functional Genomics and Proteomics. 7(2). 136–146. 14 indexed citations
20.
Mrema, John E. K., et al.. (1979). Recent developments in production and purification of malaria antigens: Harvest of Plasmodium falciparum merozoites from continuous culture. Bulletin of the World Health Organization. 57. 63. 3 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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