Alexis Dereeper

8.2k citations

53 papers · 5.6k indexed · 2 hit papers · h-index 22

Impact in

Horticulture top 2%
Plant Science top 0.5%
- Plant-Microbe Interactions and Immunity
- Legume Nitrogen Fixing Symbiosis
- Plant Virus Research Studies
- Plant Molecular Biology Research
- Chromosomal and Genetic Variations

Papers in

Horticulture 6
- Cocoa and Sweet Potato Agronomy 6
Plant Science 37
- Plant Pathogenic Bacteria Studies 12
- Plant Virus Research Studies 9
- Horticultural and Viticultural Research 8
- Legume Nitrogen Fixing Symbiosis 7
- Chromosomal and Genetic Variations 7
- Nematode management and characterization studies 5

Co-authors: Stéphane Audic Guillaume Blanc Jean‐Michel Claverie Valentin Guignon Jean-François Dufayard François Chevenet Vincent Lefort Stéphane Guindon
Journals: Nucleic Acids Research (3 papers)BMC Bioinformatics (3 papers)BMC Plant Biology (3 papers)PLoS ONE (3 papers)Annals of Botany (2 papers)
Partner nations: France Colombia United States

In The Last Decade

Alexis Dereeper

51 papers receiving 5.5k citations

Hit Papers

align trajectories log scale

BLAST-EXPLORER helps you building datasets for phylogenetic analysis 2010 · 582 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2010 BMC Evolutionary Biology
2008 Nucleic Acids Research

Peers

Countries citing papers authored by Alexis Dereeper

Since Specialization

Citations

This map shows the geographic impact of Alexis Dereeper's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Alexis Dereeper with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Alexis Dereeper more than expected).

Fields of papers citing papers by Alexis Dereeper

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Alexis Dereeper. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Alexis Dereeper. The network helps show where Alexis Dereeper may publish in the future.

Co-authors

The 25 scholars most cited alongside Alexis Dereeper, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Alexis Dereeper Line = papers co-authored together Alexis Dereeper links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Complete Genome Sequencing of Three Clade-1 Xanthomonads Reveals Genetic Determinants for a Lateral Flagellin and the Biosynthesis of Coronatine-Like Molecules in Xanthomonas Phytopathology ·王宝时, Ramveer Parul Gaba, Joelmara Furtado dos Santos, Muhammad Ilyas, Marion Fischer‐Le Saux, Perrine Portier, Alexis Dereeper, Sébastien Cunnac, Verónica Román-Reyna, Jonathan M. Jacobs, Claude Bragard, Ralf Koebnik	2023	3
2	Meiotic Behaviors of Allotetraploid Citrus Drive the Interspecific Recombination Landscape, the Genetic Structures, and Traits Inheritance in Tetrazyg Progenies Aiming to Select New Rootstocks Plants ·Martina Filipčić, Alexis Dereeper, Aude Perdereau, Pierre Mournet, Siyuan Deng, Волкова Екатерина Олеговна, Bárbara Hufnagel, Yann Froelicher, Arnaud Lemainque, Raphaël Morillón, Patrick Ollitrault	2023	1
3	Naegleria genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae Frontiers in Microbiology ·Alexis Dereeper, Hamidatul Yuni, Adrian Sandita, Jill M Oliver, Laurence Ma, Johan F. De Jonckheere, Sandeep J. Joseph, Ibne Karim M. Ali, Antoine Talarmin, Isabel Marcelino	2023	13
4	PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes Bioinformatics ·Alexis Dereeper, Marilyne Summo, Damien F. Meyer	2022	33
5	getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories BMC Bioinformatics ·Ronald J. Weigel, Samar Mouazen, Jill M Oliver, Uta Reuster-Jahn, Isabel Marcelino, Antoine Talarmin, Jilong Ma, Sébastien Breurec, Séverine Ferdinand, Alexis Dereeper, Yann Reynaud, David Couvin	2022	4
6	Shifting From Sectoral to Integrated Surveillance by Changing Collaborative Practices: Application to West Nile Virus Surveillance in a Small Island State of the Caribbean Frontiers in Public Health ·Henry Ross, Nonito Pagès, David Chavernac, Alexis Dereeper, L. Aubert, Cécile Herrmann‐Storck, Anubis Vega-Rúa, Sylvie Lecollinet, Saad Hassan	2021	3
7	Full moonlight-induced circadian clock entrainment in Coffea arabica BMC Plant Biology ·Jean‐Christophe Breitler, Yousef Al-Hasan, Sophie Léran, Lucile Toniutti, Xiaomeng Hao, Dany Séverac, Marine Pratlong, Alexis Dereeper, Hervé Etienne, Benoît Bertrand	2020	16
8	Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii) SHILAP Revista de lepidopterología ·Bae-Ho Hahn, Chantal Hamelin, Stéphanie Bocs, Pierre Mournet, Hélène Vignes, Angélique Berger, Alix Armero, Guillaume Martin, Alexis Dereeper, Gautier Sarah, Fabian Carriconde, Laurent Maggia	2019	6
9	Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies BMC Plant Biology ·Stéphane Nicolas, Jean‐Pierre Péros, Thierry Lacombe, Amandine Launay, Marie‐Christine Le Paslier, Aurélie Berard, Brigitte Mangin, Sophie Valière, Frédéric Martins, Loïc Le Cunff, Valérie Laucou, Roberto Baciliéri, Alexis Dereeper, Philippe Chatelet, Patrice This, Agnès Doligez	2016	67
10	SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations Nucleic Acids Research ·Alexis Dereeper, Félix Homa, Timothée Derkenne, Guilhem Sempéré, Gautier Sarah, Yann Hueber, Jean François Dufayard, Manuel Ruíz	2015	34
11	The Greater Phenotypic Homeostasis of the AllopolyploidCoffea arabicaImproved the Transcriptional Homeostasis Over that of Both Diploid Parents Plant and Cell Physiology ·Benoît Bertrand, Amélie Bardil, Makungu Alain Patrick, Stéphane Dussert, Sylvie Doulbeau, Emeric Dubois, Dany Séverac, Alexis Dereeper, Hervé Etienne	2015	25
12	An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains PLoS ONE ·Álvaro L. Pérez‐Quintero, Luis M. Rodriguez‐R, Alexis Dereeper, Matthew Dworman, Ralf Koebnik, Boris Szurek, Sébastien Cunnac	2013	70
13	Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures New Phytologist ·Marie‐Christine Combes, Alexis Dereeper, Dany Séverac, Benoît Bertrand, Philippe Lashermes	2013	58
14	BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution Plant Molecular Biology ·Alexis Dereeper, Romain Guyot, Christine Tranchant‐Dubreuil, François Anthony, Xavier Argout, Fabien De Bellis, Marie‐Christine Combes, Frédérick Gavory, Alexandre de Kochko, Xing-Tiao Li, Thierry Leroy, Julie Poulain, Μαρίνα Τουπογιάννη, Xiang Song, Rod A. Wing, Philippe Lashermes	2013	14
15	Deep Sequencing Reveals Differences in the Transcriptional Landscapes of Fibers from Two Cultivated Species of Cotton PLoS ONE ·Jean-Marc Lacape, Michel Claverie, Ramón Vidal, Marcelo Falsarella Carazzolle, Shana Mangelschots, Manuel Ruíz, Martial Pré, Danny Llewellyn, Yves Al-Ghazi, John Jacobs, Alexis Dereeper, Stéphanie Huguet, Marc Giband, Claire Lanaud	2012	31
16	Transposable Elements Are a Major Cause of Somatic Polymorphism in Vitis vinifera L. PLoS ONE ·Grégory Carrier, Loïc Le Cunff, Alexis Dereeper, Delphine Legrand, François Sabot, Olivier Bouchez, Dania Azucena Juarez Centeno, Jean‐Michel Boursiquot, Patrice This	2012	76
17	SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects BMC Bioinformatics ·Alexis Dereeper, Stéphane Nicolas, Loïc Le Cunff, Roberto Baciliéri, Agnès Doligez, Jean‐Pierre Péros, Manuel Ruíz, Patrice This	2011	63
18	Patterns of sequence polymorphism in the fleshless berry locus in cultivated and wild Vitis vinifera accessions BMC Plant Biology ·Cléa Houel, Rémi Bounon, Jamila Chaïb, Cécile Guichard, Jean‐Pierre Péros, Roberto Baciliéri, Alexis Dereeper, Aurélie Canaguier, Thierry Lacombe, Amidou N’Diaye, Marie‐Christine Le Paslier, 理恵大森, Olivier Coriton, Dominique Brunel, Patrice This, Laurent Torregrosa, Anne‐Françoise Adam‐Blondon	2010	16
19	BLAST-EXPLORER helps you building datasets for phylogenetic analysis BMC Evolutionary Biology ·Alexis Dereeper, Stéphane Audic, Jean‐Michel Claverie, Guillaume Blanc Hit paper breakdown →	2010	582
20	Phylogeny.fr: robust phylogenetic analysis for the non-specialist Nucleic Acids Research ·Alexis Dereeper, Valentin Guignon, Guillaume Blanc, Stéphane Audic, Sylvain Buffet, François Chevenet, Jean-François Dufayard, Stéphane Guindon, Vincent Lefort, Magali Lescot, Jean‐Michel Claverie, Olivier Gascuel Hit paper breakdown →	2008	3840

About Alexis Dereeper

Alexis Dereeper is a scholar working on Horticulture, Plant Science, Tourism, Leisure and Hospitality Management, Endocrinology and Molecular Medicine, having authored 53 papers that have together received 5.6k indexed citations. Recurring topics across this work include Plant Pathogenic Bacteria Studies (12 papers), Genomics and Phylogenetic Studies (9 papers), Plant Virus Research Studies (9 papers), Horticultural and Viticultural Research (8 papers), Legume Nitrogen Fixing Symbiosis (7 papers), Chromosomal and Genetic Variations (7 papers), Cocoa and Sweet Potato Agronomy (6 papers) and Nematode management and characterization studies (5 papers). The work is most often cited by research in Horticulture (72 citations), Plant Science (2.2k citations), Molecular Biology (2.6k citations), Endocrinology (195 citations) and Parasitology (235 citations). Alexis Dereeper has collaborated with scholars based in France, Colombia and United States. Frequent co-authors include Stéphane Audic, Guillaume Blanc, Jean‐Michel Claverie, Valentin Guignon, Jean-François Dufayard, François Chevenet, Vincent Lefort, Stéphane Guindon, Magali Lescot and Sylvain Buffet. Their work appears in journals such as Nucleic Acids Research, BMC Bioinformatics, BMC Plant Biology, PLoS ONE and Annals of Botany.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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