Alain Denise

2.7k total citations · 1 hit paper
43 papers, 1.7k citations indexed

About

Alain Denise is a scholar working on Molecular Biology, Artificial Intelligence and Computational Theory and Mathematics. According to data from OpenAlex, Alain Denise has authored 43 papers receiving a total of 1.7k indexed citations (citations by other indexed papers that have themselves been cited), including 28 papers in Molecular Biology, 11 papers in Artificial Intelligence and 8 papers in Computational Theory and Mathematics. Recurrent topics in Alain Denise's work include RNA and protein synthesis mechanisms (24 papers), RNA modifications and cancer (15 papers) and RNA Research and Splicing (9 papers). Alain Denise is often cited by papers focused on RNA and protein synthesis mechanisms (24 papers), RNA modifications and cancer (15 papers) and RNA Research and Splicing (9 papers). Alain Denise collaborates with scholars based in France, United States and Canada. Alain Denise's co-authors include Yann Ponty, Kévin Darty, Mireille Régnier, Yu Zhou, Paul Zimmermann, Marie-Claude Gaudel, Dominique Barth, Xiang‐Dong Fu, Yi Zhang and Jean‐Pierre Rousset and has published in prestigious journals such as Nucleic Acids Research, SHILAP Revista de lepidopterología and Bioinformatics.

In The Last Decade

Alain Denise

43 papers receiving 1.6k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

VARNA: Interactive drawing and editing of the RNA secondary structure

2009 962 citations Alain Denise, Yann Ponty et al. Bioinformatics profile →

Peers

Alain Denise

MB

ECOLO

AI

GENET

PS

Yann Ponty France

Lars Malmström Sweden

Kyungsook Han South Korea

Kengo Sato Japan

Sebastian Will Germany

Philip Bucher Germany

Peter Clote United States

Toshiaki Katayama Japan

Tin Wee Tan Singapore

Jean-François Taly Spain

Yann Ponty France

Alain Denise

1.4k ×1.1

MB

221 ×1.1

ECOLO

46 ×0.4

AI

174 ×1.4

GENET

137 ×1.1

PS

Citations per year, relative to Alain Denise Alain Denise (= 1×) peers Yann Ponty

Countries citing papers authored by Alain Denise

Since Specialization

Citations

This map shows the geographic impact of Alain Denise's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Alain Denise with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Alain Denise more than expected).

Fields of papers citing papers by Alain Denise

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Alain Denise. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Alain Denise. The network helps show where Alain Denise may publish in the future.

Co-authorship network of co-authors of Alain Denise

This figure shows the co-authorship network connecting the top 25 collaborators of Alain Denise. A scholar is included among the top collaborators of Alain Denise based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Alain Denise. Alain Denise is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

1.

Reinharz, Vladimir, et al.. (2021). Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs. PLoS Computational Biology. 17(5). e1008990–e1008990. 6 indexed citations

2.

Labedan, Bernard, et al.. (2019). CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts. BMC Bioinformatics. 20(1). 19–19. 4 indexed citations

3.

Bernauer, Julie, et al.. (2015). GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies. PLoS ONE. 10(8). e0136444–e0136444. 7 indexed citations

4.

Shao, Changwei, Bo Yang, Tongbin Wu, et al.. (2014). Mechanisms for U2AF to define 3′ splice sites and regulate alternative splicing in the human genome. Nature Structural & Molecular Biology. 21(11). 997–1005. 134 indexed citations

5.

Pereira, Cécile, Alain Denise, & Olivier Lespinet. (2014). A meta-approach for improving the prediction and the functional annotation of ortholog groups. BMC Genomics. 15(S6). S16–S16. 18 indexed citations

6.

Lamiable, Alexis, et al.. (2012). Automated prediction of three-way junction topological families in RNA secondary structures. Computational Biology and Chemistry. 37. 1–5. 18 indexed citations

7.

Denise, Alain, et al.. (2012). A new dichotomic algorithm for the uniform random generation of words in regular languages. Theoretical Computer Science. 502. 165–176. 5 indexed citations

8.

Régnier, Mireille, et al.. (2011). Counting RNA Pseudoknotted Structures. Journal of Computational Biology. 18(10). 1339–1351. 5 indexed citations

9.

Denise, Alain, et al.. (2010). Controlled non-uniform random generation of decomposable structures. Theoretical Computer Science. 411(40-42). 3527–3552. 10 indexed citations

10.

Liu, Wei, Yu Zhou, Zexi Hu, et al.. (2010). Regulation of splicing enhancer activities by RNA secondary structures. FEBS Letters. 584(21). 4401–4407. 18 indexed citations

11.

Denise, Alain, et al.. (2008). Automated motif extraction and classification in RNA tertiary structures. RNA. 14(12). 2489–2497. 32 indexed citations

12.

Barth, Dominique, et al.. (2007). Shuffling biological sequences with motif constraints. Journal of Discrete Algorithms. 6(2). 192–204. 12 indexed citations

13.

Namy, Olivier, Yu Zhou, Sarath Gundllapalli, et al.. (2007). Adding pyrrolysine to the Escherichia coli genetic code. FEBS Letters. 581(27). 5282–5288. 50 indexed citations

14.

Denise, Alain, et al.. (2003). Random Generation of Structured Genomic Sequences. 8 indexed citations

15.

Corteel, Sylvie, et al.. (2003). The permutation-path coloring problem on trees. Theoretical Computer Science. 297(1-3). 119–143. 6 indexed citations

16.

Bekaert, Michaël, Laure Bidou, Alain Denise, et al.. (2003). Towards a computational model for −1 eukaryotic frameshifting sites. Bioinformatics. 19(3). 327–335. 38 indexed citations

17.

Corteel, Sylvie, Alain Denise, & Dominique Gouyou-Beauchamps. (2000). Bijections for Directed Animals on Infinite Families of Lattices. Annals of Combinatorics. 4(3). 269–284. 4 indexed citations

18.

Denise, Alain & Paul Zimmermann. (1999). Uniform random generation of decomposable structures using floating-point arithmetic. Theoretical Computer Science. 218(2). 233–248. 33 indexed citations

19.

Denise, Alain & Rodica Simion. (1995). Two combinatorial statistics on Dyck paths. Discrete Mathematics. 137(1-3). 155–176. 17 indexed citations

20.

Gros, Charley, et al.. (1968). [Nontraumatic cerebrospinal rhinorrhea].. PubMed. 17(2). 93–8 passim. 2 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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