Citation Impact
Citing Papers
HTSeq—a Python framework to work with high-throughput sequencing data
2014 Standout
The biomass distribution on Earth
2018 Standout
antiSMASH 6.0: improving cluster detection and comparison capabilities
2021 Standout
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
2015 Standout
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
fastp: an ultra-fast all-in-one FASTQ preprocessor
2018 Standout
Stretch-activated ion channels identified in the touch-sensitive structures of carnivorous Droseraceae plants
2021 StandoutNobel
Soil microbial sources of nitrous oxide: recent advances in knowledge, emerging challenges and future direction
2011
Gene finding in novel genomes
2004 Standout
A survey of best practices for RNA-seq data analysis
2016 Standout
The N-terminal Domain of Drosophila Gram-negative Binding Protein 3 (GNBP3) Defines a Novel Family of Fungal Pattern Recognition Receptors
2009 StandoutNobel
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
2023 Standout
Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2′,3′ cGAMP Signaling
2015 StandoutNobel
Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences
2002 StandoutNobel
The physiology and habitat of the last universal common ancestor
2016
Catalytically Active Cas9 Mediates Transcriptional Interference to Facilitate Bacterial Virulence
2019 StandoutNobel
Environmental and health effects of the herbicide glyphosate
2017 Standout
Genome Annotation Assessment in Drosophila melanogaster
2000
Protein-bound molybdenum cofactor is bioavailable and rescues molybdenum cofactor-deficient C. elegans
2021 StandoutNobel
AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment
2017
Going back to the roots: the microbial ecology of the rhizosphere
2013 Standout
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
The untranslated regions of eukaryotic mRNAs: Structure, function, evolution and bioinformatic tools for their analysis
2000
The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing
2012
The MEME Suite
2015 Standout
Biochar and denitrification in soils: when, how much and why does biochar reduce N2O emissions?
2013 Standout
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
2015 Standout
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
The Schizosaccharomyces pombe endo‐1,3‐β‐glucanase Eng1 contains a novel carbohydrate binding module required for septum localization
2008
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data
2017
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs
2012
Molecular evolutionary and structural analysis of the cytosolic DNA sensor cGAS and STING
2014
Microbial nitrate respiration – Genes, enzymes and environmental distribution
2011
Protein aggregation and neurodegenerative disease
2004 Standout
Massively parallel determination and modeling of endonuclease substrate specificity
2014 StandoutNobel
Conservation and Diversity of Seed Associated Endophytes in Zea across Boundaries of Evolution, Ethnography and Ecology
2011
ProRule: a new database containing functional and structural information on PROSITE profiles
2005
The pangenome of an agronomically important crop plant Brassica oleracea
2016 Standout
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
2018 Standout
Experimental strategies for studying transcription factor-DNA binding specificities
2010
A Pattern-Based Method for the Identification of MicroRNA Binding Sites and Their Corresponding Heteroduplexes
2006 Standout
Molecular Epidemiology Reveals Long‐Term Changes in HIV Type 1 Subtype B Transmission in Switzerland
2010
Global epidemiology of HIV infection in men who have sex with men
2012 Standout
A computational framework to explore large-scale biosynthetic diversity
2019
Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
2017 Standout
Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis
2017 Standout
Keystone taxa as drivers of microbiome structure and functioning
2018 Standout
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
2015 Standout
The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
2020 Standout
MyHits: improvements to an interactive resource for analyzing protein sequences
2007
Mining museums for historical DNA: advances and challenges in museomics
2021 Standout
The toxic Aβ oligomer and Alzheimer's disease: an emperor in need of clothes
2012 Standout
TMEM41B Is a Pan-flavivirus Host Factor
2020 StandoutNobel
Soil microbiomes and climate change
2019 Standout
Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.
2020 StandoutNobel
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms
1999
The microbial nitrogen-cycling network
2018 Standout
TRANSFAC(R): transcriptional regulation, from patterns to profiles
2003 Standout
Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution
2015 StandoutNobel
CADD: predicting the deleteriousness of variants throughout the human genome
2018 Standout
Hypoxia-inducible factor induces cysteine dioxygenase and promotes cysteine homeostasis in Caenorhabditis elegans
2023 StandoutNobel
Toward Genetics-Based Virus Taxonomy: Comparative Analysis of a Genetics-Based Classification and the Taxonomy of Picornaviruses
2012
Conformational Abs recognizing a generic amyloid fibril epitope
2002
The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
2015 Standout
Climate controls prokaryotic community composition in desert soils of the southwestern United States
2017
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview
2007 Standout
A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions
2014
Adding leaves to the Lepidoptera tree: capturing hundreds of nuclear genes from old museum specimens
2021
Fragmentary Gene Sequences Negatively Impact Gene Tree and Species Tree Reconstruction
2017
Hydrazine Synthase, a Unique Phylomarker with Which To Study the Presence and Biodiversity of Anammox Bacteria
2011
Life in Dry Soils: Effects of Drought on Soil Microbial Communities and Processes
2018
Heparan Sulfate Proteoglycans and Viral Attachment: True Receptors or Adaptation Bias?
2019
Soil ecotoxicity assessment of glyphosate use under field conditions: microbial activity and community structure of Eubacteria and ammonia‐oxidising bacteria
2015
The Mononuclear Molybdenum Enzymes
2014 Standout
Common Structure of Soluble Amyloid Oligomers Implies Common Mechanism of Pathogenesis
2003 StandoutScience
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
2012
W-ChIPMotifs: a web application tool forde novomotif discovery from ChIP-based high-throughput data
2009
Structure and Functions of the Bacterial Microbiota of Plants
2013 Standout
Structure and function of methanogenic microbial communities in sediments of Amazonian lakes with different water types
2016
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
2009 Standout
Works of Thomas Junier being referenced
Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment
2009
Evaluation of Computer Tools for the Prediction of Transcription Factor Binding Sites on Genomic DNA
1998
SEView: A Java Applet for Browsing Molecular Sequence Data
1998
Rhinovirus Genome Evolution during Experimental Human Infection
2010
Dotlet: diagonal plots in a Web browser
2000
Rhinovirus Genome Variation during Chronic Upper and Lower Respiratory Tract Infections
2011
CEGA—a catalog of conserved elements from genomic alignments
2015
A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes
2016
The cis-acting replication elements define human enterovirus and rhinovirus species
2008
The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection
2009
Comparative in silico analysis of PCR primers suited for diagnostics and cloning of ammonia monooxygenase genes from ammonia-oxidizing bacteria
2008
Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species
2008
The Eukaryotic Promoter Database (EPD): recent developments
1999
Endospore‐enriched sequencing approach reveals unprecedented diversity of F irmicutes in sediments
2014
mmsearch: a motif arrangement language and search program
2001
TRiFLe, a Program for In Silico Terminal Restriction Fragment Length Polymorphism Analysis with User-Defined Sequence Sets
2008
The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell
2010
Quantification of Endospore-Forming Firmicutes by Quantitative PCR with the Functional Genespo0A
2013