Standout Papers

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence 1997 2026 2006 2016 8.5k
  1. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence (1997)
    Todd M. Lowe, Sean R. Eddy Nucleic Acids Research
  2. Pfam: the protein families database (2013)
    ROBERT FINN, Alex Bateman et al. Nucleic Acids Research
  3. Accelerated Profile HMM Searches (2011)
    Sean R. Eddy PLoS Computational Biology
  4. The Pfam protein families database: towards a more sustainable future (2015)
    ROBERT FINN, Penelope Coggill et al. Nucleic Acids Research
  5. Profile hidden Markov models. (1998)
    Sean R. Eddy Bioinformatics
  6. HMMER web server: interactive sequence similarity searching (2011)
    ROBERT FINN, Jody Clements et al. Nucleic Acids Research
  7. The Pfam protein families database in 2019 (2018)
    Sara El-Gebali, Jaina Mistry et al. Nucleic Acids Research
  8. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence (1997)
    Todd M. Lowe, Sean R. Eddy Nucleic Acids Research
  9. The Pfam protein families database (2011)
    Marco Punta, Penny Coggill et al. Nucleic Acids Research
  10. The Pfam protein families database (2009)
    ROBERT FINN, Jaina Mistry et al. Nucleic Acids Research
  11. Infernal 1.1: 100-fold faster RNA homology searches (2013)
    Eric P. Nawrocki, Sean R. Eddy Bioinformatics
  12. Biological Sequence Analysis (1998)
    Richard Durbin, Sean R. Eddy et al. Cambridge University Press eBooks
  13. The Pfam protein families database (2007)
    ROBERT FINN, John Tate et al. Nucleic Acids Research
  14. HMMER web server: 2018 update (2018)
    Simon Potter, Aurélien Luciani et al. Nucleic Acids Research
  15. A uniform system for microRNA annotation (2003)
    Victor Ambros, Bonnie Bartel et al. RNA
  16. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions (2013)
    Jaina Mistry, ROBERT FINN et al. Nucleic Acids Research
  17. Infernal 1.0: inference of RNA alignments (2009)
    Eric P. Nawrocki, Diana L. Kolbe et al. Bioinformatics
  18. Non–coding RNA genes and the modern RNA world (2001)
    Sean R. Eddy Nature Reviews Genetics
  19. Pfam: A comprehensive database of protein domain families based on seed alignments (1997)
    Erik L. L. Sonnhammer, Sean R. Eddy et al. Proteins Structure Function and Bioinformatics
  20. A new generation of homology search tools based on probabilistic inference. (2009)
    Sean R. Eddy PubMed
  21. Hidden Markov models (1996)
    Sean R. Eddy Current Opinion in Structural Biology
  22. Hidden Markov model speed heuristic and iterative HMM search procedure (2010)
    L. Steven Johnson, Sean R. Eddy et al. BMC Bioinformatics
  23. Rfam 12.0: updates to the RNA families database (2014)
    Eric P. Nawrocki, Sarah Burge et al. Nucleic Acids Research
  24. Nucleotide Sequence of Yellow Fever Virus: Implications for Flavivirus Gene Expression and Evolution (1985)
    Charles M. Rice, Edith M. Lenches et al. Science
  25. Rfam: updates to the RNA families database (2008)
    Paul P. Gardner, Jennifer Daub et al. Nucleic Acids Research
  26. HMMER web server: 2015 update (2015)
    ROBERT FINN, Jody Clements et al. Nucleic Acids Research
  27. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families (2017)
    Ioanna Kalvari, Joanna Argasinska et al. Nucleic Acids Research
  28. Rfam 11.0: 10 years of RNA families (2012)
    Sarah Burge, Jennifer Daub et al. Nucleic Acids Research
  29. Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes (2002)
    Zhirong Bao, Sean R. Eddy Genome Research
  30. nhmmer: DNA homology search with profile HMMs (2013)
    Travis J. Wheeler, Sean R. Eddy Bioinformatics
  31. Rfam 14: expanded coverage of metagenomic, viral and microRNA families (2020)
    Ioanna Kalvari, Eric P. Nawrocki et al. Nucleic Acids Research
  32. RNA sequence analysis using covariance models (1994)
    Sean R. Eddy, Richard Durbin Nucleic Acids Research
  33. Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain (2015)
    Alisa Mo, Eran A. Mukamel et al. Neuron
  34. The Dfam database of repetitive DNA families (2015)
    Robert Hubley, ROBERT FINN et al. Nucleic Acids Research

Immediate Impact

47 by Nobel laureates 44 from Science/Nature 208 standout
Sub-graph 1 of 17

Citing Papers

Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
54 intermediate papers

Works of Sean R. Eddy being referenced

The Pfam protein families database in 2019
2018 Standout
Accelerated Profile HMM Searches
2011 Standout
and 24 more

Author Peers

Author Last Decade Papers Cites
Sean R. Eddy 52449 12711 8865 17858 125 72.9k
Björn Usadel 29516 8287 7290 21027 184 56.7k
Ben Langmead 47882 7924 10910 17852 77 76.0k
Alex Bateman 39518 7247 6694 13384 156 55.7k
Eugene W. Myers 49131 13732 11559 18924 113 84.9k
David J. Lipman 64340 17686 14724 22284 77 109.1k
ROBERT FINN 32537 7199 5183 12388 146 47.1k
Frederick Sanger 60983 9277 19367 10869 75 88.4k
Gábor Marth 31771 5944 20682 12767 69 58.3k
Minoru Kanehisa 73697 10794 9876 13696 253 109.5k
Rodrigo López 31690 7668 7160 12878 64 55.8k

All Works

Loading papers...

Rankless by CCL
2026