Citation Impact
Citing Papers
The Sequence Alignment/Map format and SAMtools
2009 Standout
Genome-wide CRISPR screens reveal a specific ligand for the glycan-binding immune checkpoint receptor Siglec-7
2021 StandoutNobel
Circulating microRNA profiles in human patients with acetaminophen hepatotoxicity or ischemic hepatitis
2014 StandoutNobel
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
2009 Standout
MicroRNA-466l Upregulates IL-10 Expression in TLR-Triggered Macrophages by Antagonizing RNA-Binding Protein Tristetraprolin-Mediated IL-10 mRNA Degradation
2010
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
A scaling normalization method for differential expression analysis of RNA-seq data
2010 Standout
Platelet factor 4–induced T H 1-T reg polarization suppresses antitumor immunity
2024 StandoutScienceNobel
Exosomal transfer of stroma-derived miR21 confers paclitaxel resistance in ovarian cancer cells through targeting APAF1
2016
Regulation of microRNA function in animals
2018 Standout
A view on drug resistance in cancer
2019 StandoutNature
CD22 blockade restores homeostatic microglial phagocytosis in ageing brains
2019 StandoutNatureNobel
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
2013 StandoutNobel
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
2010 Standout
Barcoding bias in high-throughput multiplex sequencing of miRNA
2011
Integrated proteomic analysis of post-translational modifications by serial enrichment
2013
Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future
2017 Standout
Pattern Recognition Receptors and Inflammation
2010 Standout
An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex
2014 Standout
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Sequence features associated with microRNA strand selection in humans and flies
2009
microRNAs associated with the different human Argonaute proteins
2012
Systems biology of innate immunity
2008
Metazoan MicroRNAs
2018 Standout
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer
2013
Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells
2020
An efficient and sensitive method for preparing cDNA libraries from scarce biological samples
2014 StandoutNobel
Endogenous miRNA Sponge lincRNA-RoR Regulates Oct4, Nanog, and Sox2 in Human Embryonic Stem Cell Self-Renewal
2013
A timeline of tumour-associated macrophage biology
2023
Expansion of the eukaryotic proteome by alternative splicing
2010 StandoutNature
Diversifying microRNA sequence and function
2013
Tumour heterogeneity and cancer cell plasticity
2013 StandoutNature
Modifications of Small RNAs and Their Associated Proteins
2010
RazerS—fast read mapping with sensitivity control
2009
Next-generation DNA sequencing
2008 Standout
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
The development and impact of 454 sequencing
2008
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
Technologies for the Global Discovery and Analysis of Alternative Splicing
2007
Gut microbiota, metabolites and host immunity
2016 Standout
Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells
2008
Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
2010
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
2008 Standout
Clonal evolution in cancer
2012 StandoutNature
IsomiRs – the overlooked repertoire in the dynamic microRNAome
2012
The PI3K Pathway in Human Disease
2017 Standout
Topological domains in mammalian genomes identified by analysis of chromatin interactions
2012 StandoutNature
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Comprehensive Integration of Single-Cell Data
2019 Standout
Tumour evolution inferred by single-cell sequencing
2011 StandoutNature
A systems approach to infectious disease
2020
Complexity of the microRNA repertoire revealed by next-generation sequencing
2010
Applications of Ultra-high-Throughput Sequencing
2009
A guide to cancer immunotherapy: from T cell basic science to clinical practice
2020 Standout
Zcchc11-dependent uridylation of microRNA directs cytokine expression
2009
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
Comprehensive profiling of circulating microRNA via small RNA sequencing of cDNA libraries reveals biomarker potential and limitations
2013
Widespread regulatory activity of vertebrate microRNA* species
2010
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
2015 StandoutNobel
Drug Discovery and Natural Products: End of an Era or an Endless Frontier?
2009 StandoutScience
SPAS-1 (stimulator of prostatic adenocarcinoma-specific T cells)/SH3GLB2: A prostate tumor antigen identified by CTLA-4 blockade
2008 StandoutNobel
Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses
2011 StandoutNobel
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
A feedback circuit involving let-7-family miRNAs and DAF-12 integrates environmental signals and developmental timing in Caenorhabditis elegans
2009 StandoutNobel
Predicting effective microRNA target sites in mammalian mRNAs
2015 Standout
Cutadapt removes adapter sequences from high-throughput sequencing reads
2011 Standout
Simultaneous inhibition of two regulatory T-cell subsets enhanced Interleukin-15 efficacy in a prostate tumor model
2012 StandoutNobel
FIREWORKS: a bottom-up approach to integrative coessentiality network analysis
2020
Structural bias in T4 RNA ligase-mediated 3′-adapter ligation
2012
Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model
2008
Fast and accurate short read alignment with Burrows–Wheeler transform
2009 Standout
Copper induces cell death by targeting lipoylated TCA cycle proteins
2022 StandoutScience
The biology , function , and biomedical applications of exosomes
2020 StandoutScience
Cancer Genome Landscapes
2013 StandoutScience
Next-Generation DNA Sequencing Methods
2008
Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing
2011
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
2020 StandoutNobel
Works of Malachi Griffith being referenced
A Phase I Trial of BKM120 (Buparlisib) in Combination with Fulvestrant in Postmenopausal Women with Estrogen Receptor–Positive Metastatic Breast Cancer
2015
In-depth characterization of the microRNA transcriptome in a leukemia progression model
2008
SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution
2014
Impact of whole genome amplification on analysis of copy number variants
2008
Systematic Recovery and Analysis of Full-ORF Human cDNA Clones
2004
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
2008
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
2006
cDNA Hybrid Capture Improves Transcriptome Analysis on Low-Input and Archived Samples
2014
Interaction of Cyclin-Dependent Kinase 12/CrkRS with Cyclin K1 Is Required for the Phosphorylation of the C-Terminal Domain of RNA Polymerase II
2012
Rapid progression of adult T-cell leukemia/lymphoma as tumor-infiltrating Tregs after PD-1 blockade
2019
DGIdb 3.0: a redesign and expansion of the drug–gene interaction database
2017