Standout Papers

Human DNA methylomes at base resolution show wid... 1993 2026 2004 2015 3.3k
  1. Human DNA methylomes at base resolution show widespread epigenomic differences (2009)
    Ryan Lister, Mattia Pelizzola et al. Nature
  2. Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis (2008)
    Ryan Lister, Ronan C. O’Malley et al. Cell
  3. CTR1, a negative regulator of the ethylene response pathway in arabidopsis, encodes a member of the Raf family of protein kinases (1993)
    Joseph J. Kieber, Madge Rothenberg et al. Cell
  4. Ethylene Biosynthesis and Signaling Networks (2002)
    Hai Li, Joseph R. Ecker et al. The Plant Cell
  5. HIV-1 Integration in the Human Genome Favors Active Genes and Local Hotspots (2002)
    Paul Shinn, Huaming Chen et al. Cell
  6. Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis (2006)
    Xiaoyu Zhang, Junshi Yazaki et al. Cell
  7. The NIH Roadmap Epigenomics Mapping Consortium (2010)
    B Bernstein, J Stamatoyannopoulos et al. Nature Biotechnology
  8. Phased diploid genome assembly with single-molecule real-time sequencing (2016)
    Chen-Shan Chin, Paul Peluso et al. Nature Methods
  9. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells (2011)
    Ryan Lister, Mattia Pelizzola et al. Nature
  10. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape (2016)
    Ronan C. O’Malley, Shao‐shan Carol Huang et al. Cell
  11. Chromatin architecture reorganization during stem cell differentiation (2015)
    Jesse R. Dixon, Inkyung Jung et al. Nature
  12. EIN2, a Bifunctional Transducer of Ethylene and Stress Responses in Arabidopsis (1999)
    José M. Alonso, Takashi Hirayama et al. Science
  13. Exploiting the triple response of Arabidopsis to identify ethylene-related mutants. (1990)
    Plinio Guzmán, Joseph R. Ecker The Plant Cell
  14. Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1 (1998)
    Roberto Solano, Anna N. Stepanova et al. Genes & Development
  15. Assignment of 30 Microsatellite Loci to the Linkage Map of Arabidopsis (1994)
    Callum J. Bell, Joseph R. Ecker Genomics
  16. Functional Genomic Analysis of theAUXIN RESPONSE FACTORGene Family Members inArabidopsis thaliana: Unique and Overlapping Functions ofARF7andARF19  (2005)
    Yoko Okushima, Paul Overvoorde et al. The Plant Cell
  17. Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues (2005)
    Xinmin Zhang, Duncan T. Odom et al. Proceedings of the National Academy of Sciences
  18. Activation of the Ethylene Gas Response Pathway in Arabidopsis by the Nuclear Protein ETHYLENE-INSENSITIVE3 and Related Proteins (1997)
    Qimin Chao, Madge Rothenberg et al. Cell
  19. Arabidopsis RIN4 Is a Target of the Type III Virulence Effector AvrRpt2 and Modulates RPS2-Mediated Resistance (2003)
    David Mackey, Youssef Belkhadir et al. Cell
  20. The ethylene signaling pathway: new insights (2003)
    Hongwei Guo, Joseph R. Ecker Current Opinion in Plant Biology
  21. Widespread dynamic DNA methylation in response to biotic stress (2012)
    Robert H. Dowen, Mattia Pelizzola et al. Proceedings of the National Academy of Sciences
  22. Retroviral DNA Integration: ASLV, HIV, and MLV Show Distinct Target Site Preferences (2004)
    Brett Beitzel, Paul Shinn et al. PLoS Biology
  23. Plant Responses to Ethylene Gas Are Mediated by SCFEBF1/EBF2-Dependent Proteolysis of EIN3 Transcription Factor (2003)
    Hongwei Guo, Joseph R. Ecker Cell
  24. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells (2011)
    William A. Pastor, Utz Johann Pape et al. Nature
  25. Class III Homeodomain-Leucine Zipper Gene Family Members Have Overlapping, Antagonistic, and Distinct Roles in Arabidopsis Development (2004)
    Michael J. Prigge, Denichiro Otsuga et al. The Plant Cell
  26. Type-A Arabidopsis Response Regulators Are Partially Redundant Negative Regulators of Cytokinin Signaling[W] (2004)
    Jennifer P.C. To, Georg Haberer et al. The Plant Cell
  27. The Ethylene Signal Transduction Pathway in Plants (1995)
    Joseph R. Ecker Science
  28. Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation (2005)
    Punita Nagpal, Christine Ellis et al. Development
  29. Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana (2007)
    Richard M. Clark, Gabriele Schweikert et al. Science
  30. Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants (2011)
    Robert J. Schmitz, Matthew D. Schultz et al. Science
  31. Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain (2015)
    Alisa Mo, Eran A. Mukamel et al. Neuron
  32. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light (2015)
    Ullas V. Pedmale, Shao‐shan Carol Huang et al. Cell
  33. Dynamic DNA methylation: In the right place at the right time (2018)
    Chongyuan Luo, Petra Hájková et al. Science
  34. ArabidopsisBasic Helix-Loop-Helix Transcription Factors MYC2, MYC3, and MYC4 Regulate Glucosinolate Biosynthesis, Insect Performance, and Feeding Behavior   (2013)
    Fabian Schweizer, Patricia Fernández‐Calvo et al. The Plant Cell
  35. Linking photoreceptor excitation to changes in plant architecture (2012)
    Lin Li, Karin Ljung et al. Genes & Development
  36. Human body epigenome maps reveal noncanonical DNA methylation variation (2015)
    Matthew D. Schultz, Yupeng He et al. Nature
  37. Mapping genome-wide transcription-factor binding sites using DAP-seq (2017)
    Anna Bartlett, Ronan C. O’Malley et al. Nature Protocols
  38. Patterns of population epigenomic diversity (2013)
    Robert J. Schmitz, Matthew D. Schultz et al. Nature
  39. Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas (2012)
    Hong Qiao, Zhouxin Shen et al. Science
  40. A transcription factor hierarchy defines an environmental stress response network (2016)
    Liang Song, Shao‐shan Carol Huang et al. Science
  41. Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex (2017)
    Chongyuan Luo, Christopher L. Keown et al. Science
  42. Comprehensive analysis of single cell ATAC-seq data with SnapATAC (2021)
    Rongxin Fang, Sebastian Preißl et al. Nature Communications
  43. A rare PRIMER cell state in plant immunity (2025)
    Tatsuya Nobori, Alexander Monell et al. Nature

Immediate Impact

3 by Nobel laureates 70 from Science/Nature 150 standout
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Citing Papers

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The physiology of plant responses to drought
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57 intermediate papers

Works of Joseph R. Ecker being referenced

A transcription factor hierarchy defines an environmental stress response network
2016 StandoutScience
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
2016 Standout
and 24 more

Author Peers

Author Last Decade Papers Cites
Joseph R. Ecker 42475 41834 7531 268 65.8k
Steven Henikoff 19927 48365 11780 369 62.5k
Wen‐Hsiung Li 13856 26963 15930 373 47.0k
Alex Bateman 13384 39518 6694 156 55.7k
Yves Van de Peer 15500 22987 5659 435 35.6k
Erik L. L. Sonnhammer 10095 29897 5235 151 43.5k
ROBERT FINN 12388 32537 5183 146 47.1k
Gunnar von Heijne 13366 56966 12560 358 80.8k
L. Aravind 6429 38903 8906 377 51.6k
Lior Pachter 12097 35321 7543 163 53.7k
Jue Ruan 10694 26823 12298 64 45.0k

All Works

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