Standout Papers

Differential gene and transcript expression analysis of RNA-seq experi... 2007 2026 2013 2019 9.0k
  1. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks (2012)
    Cole Trapnell, Adam Roberts et al. Nature Protocols
  2. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis (2010)
    Rajnish A. Gupta, Nilay Shah et al. Nature
  3. The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells (2014)
    Cole Trapnell, Davide Cacchiarelli et al. Nature Biotechnology
  4. Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs (2007)
    John L. Rinn, Michael A. Kertesz et al. Cell
  5. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals (2009)
    Mitchell Guttman, Ido Amit et al. Nature
  6. Genome Regulation by Long Noncoding RNAs (2012)
    John L. Rinn, Howard Y. Chang Annual Review of Biochemistry
  7. The multilayered complexity of ceRNA crosstalk and competition (2014)
    Yvonne Tay, John L. Rinn et al. Nature
  8. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses (2011)
    Moran N. Cabili, Cole Trapnell et al. Genes & Development
  9. Differential analysis of gene regulation at transcript resolution with RNA-seq (2012)
    Cole Trapnell, David G. Hendrickson et al. Nature Biotechnology
  10. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression (2009)
    Ahmad M. Khalil, Mitchell Guttman et al. Proceedings of the National Academy of Sciences
  11. Modular regulatory principles of large non-coding RNAs (2012)
    Mitchell Guttman, John L. Rinn Nature
  12. A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response (2010)
    Maite Huarte, Mitchell Guttman et al. Cell
  13. lincRNAs act in the circuitry controlling pluripotency and differentiation (2011)
    Mitchell Guttman, Julie Donaghey et al. Nature
  14. Improving RNA-Seq expression estimates by correcting for fragment bias (2011)
    Adam Roberts, Cole Trapnell et al. Genome biology
  15. Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs (2010)
    Mitchell Guttman, Manuel Garber et al. Nature Biotechnology
  16. Global Identification of Human Transcribed Sequences with Genome Tiling Arrays (2004)
    Paul Bertone, Viktor Štolc et al. Science
  17. Control of somatic tissue differentiation by the long non-coding RNA TINCR (2012)
    Markus Kretz, Zurab Siprashvili et al. Nature
  18. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis (2011)
    Andrea Pauli, Eivind Valen et al. Genome Research
  19. A histone H3 lysine 27 demethylase regulates animal posterior development (2007)
    Fei Lan, Peter Bayliss et al. Nature
  20. Genome-wide measurement of RNA secondary structure in yeast (2010)
    Michael A. Kertesz, Yue Wan et al. Nature
  21. Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks (2016)
    David R. Kelley, Jasper Snoek et al. Genome Research
  22. Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution (2015)
    Moran N. Cabili, Margaret C. Dunagin et al. Genome Biology
  23. Discovery and annotation of long noncoding RNAs (2015)
    John S. Mattick, John L. Rinn Nature Structural & Molecular Biology
  24. Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre (2014)
    Ezgi Hacisuleyman, Loyal A. Goff et al. Nature Structural & Molecular Biology

Immediate Impact

12 by Nobel laureates 81 from Science/Nature 163 standout
Sub-graph 1 of 17

Citing Papers

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10 intermediate papers

Works of John L. Rinn being referenced

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
2014 Standout
Differential analysis of gene regulation at transcript resolution with RNA-seq
2012 Standout

Author Peers

Author Last Decade Papers Cites
John L. Rinn 51732 35832 4772 5462 143 63.9k
Thomas Tuschl 60757 34157 5259 7067 219 74.0k
Howard Y. Chang 65015 39776 5382 3288 341 81.5k
John S. Mattick 38783 22592 6785 3974 303 47.5k
Cole Trapnell 57498 16372 9239 16023 100 82.8k
Jo Vandesompele 29490 11157 5254 5475 295 49.9k
Lior Pachter 35321 7926 7543 12097 163 53.7k
T Gingeras 32513 8263 6790 4951 129 50.0k
B Bernstein 50583 11130 7826 5623 143 58.2k
Chris P. Ponting 29213 9309 5298 3994 298 37.9k
Michael I. Love 37348 8531 6718 10730 86 64.4k

All Works

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2026