Standout Papers

Force Fields for Protein Simulations 1987 2026 2000 2013 1.5k
  1. Force Fields for Protein Simulations (2003)
    Jay W. Ponder, David A. Case Advances in protein chemistry
  2. Tertiary templates for proteins (1987)
    Jay W. Ponder, Frederic M. Richards Journal of Molecular Biology
  3. Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation (2003)
    Pengyu Ren, Jay W. Ponder The Journal of Physical Chemistry B
  4. Current Status of the AMOEBA Polarizable Force Field (2010)
    Jay W. Ponder, Chuanjie Wu et al. The Journal of Physical Chemistry B
  5. An efficient newton‐like method for molecular mechanics energy minimization of large molecules (1987)
    Jay W. Ponder, Frederic M. Richards Journal of Computational Chemistry
  6. Polarizable Atomic Multipole-Based AMOEBA Force Field for Proteins (2013)
    Yue Shi, Zhen Xia et al. Journal of Chemical Theory and Computation
  7. Tinker 8: Software Tools for Molecular Design (2018)
    Joshua A. Rackers, Zhi Wang et al. Journal of Chemical Theory and Computation
  8. Ion Solvation Thermodynamics from Simulation with a Polarizable Force Field (2003)
    Alan Grossfield, Pengyu Ren et al. Journal of the American Chemical Society
  9. Polarizable Atomic Multipole-Based Molecular Mechanics for Organic Molecules (2011)
    Pengyu Ren, Chuanjie Wu et al. Journal of Chemical Theory and Computation

Immediate Impact

21 by Nobel laureates 30 from Science/Nature 108 standout
Sub-graph 1 of 18

Citing Papers

Water structure and electric fields at the interface of oil droplets
2025 StandoutNature
De novo protein design—From new structures to programmable functions
2024 Standout

Works of Jay W. Ponder being referenced

Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation
2003 Standout
Tertiary templates for proteins
1987 Standout

Author Peers

Author Last Decade Papers Cites
Jay W. Ponder 6503 4507 1765 3219 82 11.9k
Pengyu Ren 5600 4889 1695 3289 175 12.4k
Thomas Fox 9072 2977 1746 3280 56 14.9k
U. Chandra Singh 5493 2811 1501 2094 65 10.2k
A. T. Hagler 4102 2157 1577 3248 120 10.7k
David C. Spellmeyer 8221 2880 1670 2942 43 14.7k
Michael R. Shirts 9657 3407 1597 3920 108 15.3k
Gerrit Groenhof 9289 3391 1265 3128 86 18.0k
Teresa Head‐Gordon 5988 5869 2331 4907 240 14.2k
John D. Chodera 10287 3567 1924 4011 121 14.6k
Igor Vorobyov 8175 2733 1231 1568 64 12.4k

All Works

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2026