Citation Impact
Citing Papers
UpSetR: an R package for the visualization of intersecting sets and their properties
2017 Standout
TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells
2017 Standout
Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy
2015
Alpelisib for PIK3CA -Mutated, Hormone Receptor–Positive Advanced Breast Cancer
2019 Standout
Paired Exome Analysis Reveals Clonal Evolution and Potential Therapeutic Targets in Urothelial Carcinoma
2016
High burden and pervasive positive selection of somatic mutations in normal human skin
2015 StandoutScience
PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors
2015
The 2016 revision of the World Health Organization classification of lymphoid neoplasms
2016 Standout
The Genetic Landscape and Clonal Evolution of Breast Cancer Resistance to Palbociclib plus Fulvestrant in the PALOMA-3 Trial
2018
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
2019 Standout
Oncogenic mutations in histologically normal endometrium: the new normal?
2019
A survey of best practices for RNA-seq data analysis
2016 Standout
High-Definition Reconstruction of Clonal Composition in Cancer
2014
A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data
2014
Mutational landscape and significance across 12 major cancer types
2013 StandoutNature
Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma
2016
A network modeling approach to elucidate drug resistance mechanisms and predict combinatorial drug treatments in breast cancer
2017
Determining cell type abundance and expression from bulk tissues with digital cytometry
2019 Standout
Evolution of Metastases in Space and Time under Immune Selection
2018
A view on drug resistance in cancer
2019 StandoutNature
Insertion-and-deletion-derived tumour-specific neoantigens and the immunogenic phenotype: a pan-cancer analysis
2017
Cancer nanomedicine: progress, challenges and opportunities
2016 Standout
The evolving landscape of biomarkers for checkpoint inhibitor immunotherapy
2019 Standout
Approaches to treat immune hot, altered and cold tumours with combination immunotherapies
2019 Standout
Olaparib: First Global Approval
2015
Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future
2017 Standout
Hippo Pathway Gene Mutations in Malignant Mesothelioma: Revealed by RNA and Targeted Exon Sequencing
2015
Classification and mutation prediction from non–small cell lung cancer histopathology images using deep learning
2018 Standout
Understanding the tumor immune microenvironment (TIME) for effective therapy
2018 Standout
Application of second-generation sequencing to cancer genomics
2010
TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
2011
Long Noncoding RNAs in Cancer Pathways
2016 Standout
Pancreatic cancer
2016 Standout
Poly‐gene fusion transcripts and chromothripsis in prostate cancer
2012
Computational genomics tools for dissecting tumour–immune cell interactions
2016
Predicting the Functional Effect of Amino Acid Substitutions and Indels
2012 Standout
Cancer stem cells revisited
2017 Standout
Integrating single-cell transcriptomic data across different conditions, technologies, and species
2018 Standout
MPDL3280A (anti-PD-L1) treatment leads to clinical activity in metastatic bladder cancer
2014 StandoutNature
Hippo Pathway in Organ Size Control, Tissue Homeostasis, and Cancer
2015 Standout
Molecular and Genetic Properties of Tumors Associated with Local Immune Cytolytic Activity
2015 Standout
The landscape of long noncoding RNAs in the human transcriptome
2015 Standout
The single-cell transcriptional landscape of mammalian organogenesis
2019 StandoutNature
Single-cell and subcellular pharmacokinetic imaging allows insight into drug action in vivo
2013
High-performance medicine: the convergence of human and artificial intelligence
2018 Standout
ESRRA-C11orf20 Is a Recurrent Gene Fusion in Serous Ovarian Carcinoma
2011
The regulation of E2F by pRB-family proteins
1998 Standout
Spatial computation of intratumoral T cells correlates with survival of patients with pancreatic cancer
2017 StandoutNobel
SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution
2014
Sequencing thousands of single-cell genomes with combinatorial indexing
2017
SePIA: RNA and small RNA sequence processing, integration, and analysis
2016
Pan-cancer analysis of the extent and consequences of intratumor heterogeneity
2015
A fast and accurate SNP detection algorithm for next-generation sequencing data
2012
Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis
2011
HISAT: a fast spliced aligner with low memory requirements
2015 Standout
Clonal Expansion and Diversification of Cancer-Associated Mutations in Endometriosis and Normal Endometrium
2018
Unique features of long non-coding RNA biogenesis and function
2015 Standout
Advances in understanding cancer genomes through second-generation sequencing
2010
Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
2017 Standout
Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types
2012 Standout
GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases
2014 Standout
The molecular landscape of head and neck cancer
2018 Standout
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
2012 Standout
Clonal genotype and population structure inference from single-cell tumor sequencing
2016
Clonal evolution of glioblastoma under therapy
2016
Detecting repeated cancer evolution from multi-region tumor sequencing data
2018
The PI3K Pathway in Human Disease
2017 Standout
Next-generation transcriptome assembly
2011
Discovery and saturation analysis of cancer genes across 21 tumour types
2014 StandoutNature
Comprehensive Integration of Single-Cell Data
2019 Standout
OUP accepted manuscript
2016
Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing
2016
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
2013 Standout
Pan-cancer analysis of intratumor heterogeneity as a prognostic determinant of survival
2016
TIMER2.0 for analysis of tumor-infiltrating immune cells
2020 Standout
Quantitative Image Analysis of Cellular Heterogeneity in Breast Tumors Complements Genomic Profiling
2012
ChimeraScan: a tool for identifying chimeric transcription in sequencing data
2011
Transcriptome sequencing in Sézary syndrome identifies Sézary cell and mycosis fungoides-associated lncRNAs and novel transcripts
2012
Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data
2011
Next Generation of Fluorine-Containing Pharmaceuticals, Compounds Currently in Phase II–III Clinical Trials of Major Pharmaceutical Companies: New Structural Trends and Therapeutic Areas
2016 Standout
Complementary Sequence-Mediated Exon Circularization
2014 Standout
Whole transcriptome sequencing reveals recurrent NOTCH1 mutations in mantle cell lymphoma
2011
OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data
2014
Wound Healing: A Cellular Perspective
2018 Standout
Endometriosis
2020 Standout
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
2011 Standout
Cancer Genome Landscapes
2013 StandoutScience
Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs
2012
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
2014
SomaticSniper: identification of somatic point mutations in whole genome sequencing data
2011
State-of-the-Art Fusion-Finder Algorithms Sensitivity and Specificity
2013
Cancer immunotherapy using checkpoint blockade
2018 StandoutScience
Isolation and characterization of a chicken homolog of the E2F-1 transcription factor.
1995
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data
2011
Subclonal variant calling with multiple samples and prior knowledge
2014
circlizeimplements and enhances circular visualization in R
2014 Standout
Works of Gavin Ha being referenced
Tumor Growth Inhibition by Olaparib in BRCA2 Germline-Mutated Patient-Derived Ovarian Cancer Tissue Xenografts
2010
DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer
2012
deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
2011
Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer
2012
PyClone: statistical inference of clonal population structure in cancer
2014
The Metastatic Breast Cancer (MBC) project: Accelerating translational research through direct patient engagement.
2017
Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden
2015
SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors
2010
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
2012