Citation Impact
Citing Papers
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
2021 Standout
Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water
2017 StandoutScienceNobel
VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data
2020 StandoutNobel
Modeling protein–protein and protein–peptide complexes: CAPRI 6th edition
2016
Genome-wide investigation of WRKY gene family in pineapple: evolution and expression profiles during development and stress
2018 Standout
Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells
2020
Critical contribution of 3′ non-seed base pairing to the in vivo function of the evolutionarily conserved let-7a microRNA
2022 StandoutNobel
Conservation of mRNA and Protein Expression during Development of C. elegans
2014
Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program
2019
Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4
2015 StandoutNobel
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
Tissue-Specific Splicing of Disordered Segments that Embed Binding Motifs Rewires Protein Interaction Networks
2012
Large‐scale survey and database of high affinity ligands for peptide recognition modules
2020
Extensive identification and analysis of conserved small ORFs in animals
2015
Use of Host-like Peptide Motifs in Viral Proteins Is a Prevalent Strategy in Host-Virus Interactions
2014
The hypoxia response pathway promotes PEP carboxykinase and gluconeogenesis in C. elegans
2022
High-throughput muscle fiber typing from RNA sequencing data
2022 StandoutNobel
Controlling entropy to tune the functions of intrinsically disordered regions
2014
Regulation of microRNA function in animals
2018 Standout
A Molecular Link between miRISCs and Deadenylases Provides New Insight into the Mechanism of Gene Silencing by MicroRNAs
2012
ATP-dependent chromatin remodelers in ageing and age-related disorders
2020
Hallmarks of aging: An expanding universe
2023 Standout
Pfam: the protein families database
2013 Standout
Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system
2016
Possible aerosol transmission of COVID-19 and special precautions in dentistry
2020 Standout
Pooled screening for antiproliferative inhibitors of protein-protein interactions
2016
Using intron position conservation for homology-based gene prediction
2016
Alternative splicing of intrinsically disordered regions and rewiring of protein interactions
2013
The role of disordered protein regions in the assembly of decapping complexes and RNP granules
2013
The DDX6–4E-T interaction mediates translational repression and P-body assembly
2016
LYTACs that engage the asialoglycoprotein receptor for targeted protein degradation
2021 StandoutNobel
Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates
2019 Standout
Perturbed human sub-networks by Fusobacterium nucleatum candidate virulence proteins
2017
Metazoan MicroRNAs
2018 Standout
Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi
2018
The human DEPhOsphorylation database DEPOD: a 2015 update
2014
Formation and Maturation of Phase-Separated Liquid Droplets by RNA-Binding Proteins
2015 Standout
Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation
2018 Standout
Gut microbiome alterations in Alzheimer’s disease
2017 Standout
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
2016 Standout
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
A direct interaction between DCP1 and XRN1 couples mRNA decapping to 5′ exonucleolytic degradation
2012
SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions
2012
Intrinsically disordered proteins in cellular signalling and regulation
2014 Standout
Linear motifs confer functional diversity onto splice variants
2012
Targeted protein degradation: expanding the toolbox
2019
Where, When, and How: Context-Dependent Functions of RNA Methylation Writers, Readers, and Erasers
2019 Standout
PROTAC targeted protein degraders: the past is prologue
2022 Standout
The Caenorhabditis elegans GW182 protein AIN-1 interacts with PAB-1 and subunits of the PAN2-PAN3 and CCR4-NOT deadenylase complexes
2012
Motif switches: decision-making in cell regulation
2012
A Million Peptide Motifs for the Molecular Biologist
2014
A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation
2015 Standout
m6A Modification in Coding and Non-coding RNAs: Roles and Therapeutic Implications in Cancer
2020 Standout
De novo engineering of intracellular condensates using artificial disordered proteins
2020
Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems
2014
Reading, writing and erasing mRNA methylation
2019 Standout
WormBase ParaSite − a comprehensive resource for helminth genomics
2016
The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency
2018 Nature
De novo design of tyrosine and serine kinase-driven protein switches
2021 StandoutNobel
IKKβ overexpression together with a lack of tumour suppressor genes causes ameloblastic odontomas in mice
2020
Protein disorder, prion propensities, and self-organizing macromolecular collectives
2013
Genome-Wide Analysis of the Musa WRKY Gene Family: Evolution and Differential Expression during Development and Stress
2016
Phase Separation by Low Complexity Domains Promotes Stress Granule Assembly and Drives Pathological Fibrillization
2015 Standout
Relating sequence encoded information to form and function of intrinsically disordered proteins
2015
Fusobacterium nucleatum — symbiont, opportunist and oncobacterium
2018 Standout
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
Describing sequence–ensemble relationships for intrinsically disordered proteins
2012
Hypoxia-inducible factor induces cysteine dioxygenase and promotes cysteine homeostasis in Caenorhabditis elegans
2023 StandoutNobel
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
2015 StandoutNobel
Rewiring MAP kinases in Saccharomyces cerevisiae to regulate novel targets through ubiquitination
2016
Gut Microbiota is Altered in Patients with Alzheimer’s Disease
2018 Standout
Proline Rich Motifs as Drug Targets in Immune Mediated Disorders
2012
Physicochemical Properties of Cells and Their Effects on Intrinsically Disordered Proteins (IDPs)
2014
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
De novo design of modular protein hydrogels with programmable intra- and extracellular viscoelasticity
2024 StandoutNobel
Disordered Binding Regions and Linear Motifs—Bridging the Gap between Two Models of Molecular Recognition
2012
Peptide-binding specificity prediction using fine-tuned protein structure prediction networks
2023 StandoutNobel
Natural and Designed Proteins Inspired by Extremotolerant Organisms Can Form Condensates and Attenuate Apoptosis in Human Cells
2022 StandoutNobel
The large intracellular loop of hZIP4 is an intrinsically disordered zinc binding domain
2015
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Computational Evolution of Threonine-Rich β-Hairpin Peptides Mimicking Specificity and Affinity of Antibodies
2019 StandoutNobel
Promiscuity as a functional trait: intrinsically disordered regions as central players of interactomes
2013
Microbial Sources of Amyloid and Relevance to Amyloidogenesis and AlzheimerÂ’s Disease (AD)
2015
g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
2019 Standout
Liquid-Liquid Phase Separation in Biology
2014 Standout
EGF Regulates the Interaction of Tks4 with Src through Its SH2 and SH3 Domains
2018
Recognition of the HIV Capsid by the TRIM5α Restriction Factor Is Mediated by a Subset of Pre-Existing Conformations of the TRIM5α SPRY Domain
2014
The switches.ELM Resource: A Compendium of Conditional Regulatory Interaction Interfaces
2013
Machine Learning in Agriculture: A Review
2018 Standout
Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking
2019 StandoutNobel
The identification of short linear motif-mediated interfaces within the human interactome
2012
Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features
2012
Versatility from Protein Disorder
2012 Science
De novo design of protein logic gates
2020 StandoutScienceNobel
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
Works of Bora Uyar being referenced
The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans
2019
PiGx: reproducible genomics analysis pipelines with GNU Guix
2018
Attributes of short linear motifs
2011
The IκB kinase complex is a regulator of mRNA stability
2018
RNA-seq analysis of the C. briggsae transcriptome
2012
How pathogens use linear motifs to perturb host cell networks
2014
The eukaryotic linear motif resource ELM: 10 years and counting
2013
Short Linear Motifs: Ubiquitous and Functionally Diverse Protein Interaction Modules Directing Cell Regulation
2014
RCAS: an RNA centric annotation system for transcriptome-wide regions of interest
2017
Degrons in cancer
2017
HOT or not: examining the basis of high-occupancy target regions
2019
genBlastG: using BLAST searches to build homologous gene models
2011