Citation Impact
Citing Papers
Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates
2016 Standout
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
High-throughput characterization of protein–protein interactions by reprogramming yeast mating
2017 StandoutNobel
Prediction of Individual Brain Maturity Using fMRI
2010 StandoutScience
Statistical significance for genomewide studies
2003 Standout
Machine learning predicts new anti-CRISPR proteins
2020 StandoutNobel
Predicting protein–protein interactions in the context of protein evolution
2009
Integrating sequence, evolution and functional genomics in regulatory genomics
2009
WGCNA: an R package for weighted correlation network analysis
2008 Standout
Improved gRNA secondary structures allow editing of target sites resistant to CRISPR-Cas9 cleavage
2022 StandoutNobel
Controlling CRISPR-Cas9 with ligand-activated and ligand-deactivated sgRNAs
2019 StandoutNobel
The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets
2015 Standout
A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity
2008 StandoutNobel
HMMER web server: interactive sequence similarity searching
2011 Standout
Human Genetics Shape the Gut Microbiome
2014 Standout
The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia
2017 StandoutNobel
Predicting cell-type–specific gene expression from regions of open chromatin
2012
Multiplex pairwise assembly of array-derived DNA oligonucleotides
2015 StandoutNobel
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
HIF2α cooperates with RAS to promote lung tumorigenesis in mice
2009 StandoutNobel
oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes
2005
The Human Transcription Factors
2018 Standout
An experimentally derived confidence score for binary protein-protein interactions
2008
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
2014 StandoutNobel
iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence
2010
Ranking predicted protein structures with support vector regression
2007 StandoutNobel
Detection of functional DNA motifs via statistical over-representation
2004
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
2016 Standout
Computational Prediction of Protein–Protein Interactions
2007
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
Membrane Fusion
2003 StandoutNobel
Amyloid-like Self-Assembly of a Cellular Compartment
2016
IFNβ-dependent increases in STAT1, STAT2, and IRF9 mediate resistance to viruses and DNA damage
2013 StandoutNobel
A multi-modal parcellation of human cerebral cortex
2016 StandoutNature
A prediction-based resampling method for estimating the number of clusters in a dataset
2002
Unraveling transcription regulatory networks by protein–DNA and protein–protein interaction mapping
2006
scmap: projection of single-cell RNA-seq data across data sets
2018
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders
2013 Standout
A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation
2015 Standout
From signatures to models: understanding cancer using microarrays
2005
Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease
2012
SUPERFAMILY 1.75 including a domain-centric gene ontology method
2010
Evolutionary Forces Act on Promoter Length: Identification of Enriched Cis-Regulatory Elements
2009
Obesity is associated with macrophage accumulation in adipose tissue
2003 Standout
Protein disorder, prion propensities, and self-organizing macromolecular collectives
2013
Comprehensive Integration of Single-Cell Data
2019 Standout
Applied bioinformatics for the identification of regulatory elements
2004
Refined sgRNA efficacy prediction improves large- and small-scale CRISPR–Cas9 applications
2017 StandoutNobel
Making big data open: data sharing in neuroimaging
2014
Survey of Clustering Algorithms
2005 Standout
Real-time observation of DNA recognition and rejection by the RNA-guided endonuclease Cas9
2016 StandoutNobel
Methods to Study Splicing from High-Throughput RNA Sequencing Data
2014
Massively parallel kinetic profiling of natural and engineered CRISPR nucleases
2020 StandoutNobel
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
2002 Standout
Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes
2018
Feature Selection with theBorutaPackage
2010 Standout
Genomes in Focus: Development and Applications of CRISPR‐Cas9 Imaging Technologies
2017 StandoutNobel
2014
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Promiscuity as a functional trait: intrinsically disordered regions as central players of interactomes
2013
From patterns to pathways: gene expression data analysis comes of age
2002
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
2009 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Stability-Based Validation of Clustering Solutions
2004
FFPred 2.0: Improved Homology-Independent Prediction of Gene Ontology Terms for Eukaryotic Protein Sequences
2013
Activatable Photosensitizers for Imaging and Therapy
2010 Standout
Obesity is associated with macrophage accumulation in adipose tissue
2003 Standout
Clustering by fast search and find of density peaks
2014 StandoutScience
Semi-Supervised Learning
2006 Standout
Regularization and Variable Selection Via the Elastic Net
2005 Standout
Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal
2012 StandoutNobel
A tutorial on spectral clustering
2007 Standout
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
The organization of the human cerebellum estimated by intrinsic functional connectivity
2011 Standout
Gene Selection for Cancer Classification using Support Vector Machines
2002 Standout
Predicting protein–protein interactions through sequence-based deep learning
2018
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
Works of Asa Ben‐Hur being referenced
Large-scale identification of yeast integral membrane protein interactions
2005
A stability based method for discovering structure in clustered data
2001
Result Analysis of the NIPS 2003 Feature Selection Challenge
2004
A Support Vector Method for Clustering
2000
Support vector clustering
2002
Choosing negative examples for the prediction of protein-protein interactions
2006
Support Vector Machines and Kernels for Computational Biology
2008
CREME: a framework for identifying cis-regulatory modulesin human-mouse conserved segments
2003
Kernel methods for predicting protein-protein interactions
2005
CREME: Cis-Regulatory Module Explorer for the human genome
2004
A User’s Guide to Support Vector Machines
2009
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data
2012
Computation in gene networks
2003
Remote homology detection: a motif based approach
2003
De novo design of synthetic prion domains
2012
The use of gene ontology evidence codes in preventing classifier assessment bias
2009
Experimental and computational approaches for the study of calmodulin interactions
2011
Support vector clustering
2008
Multiple instance learning of Calmodulin binding sites
2012