Citation Impact
Citing Papers
Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock
2023 StandoutNobel
Efficient flexible backbone protein–protein docking for challenging targets
2018
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
SARS-CoV-2 growth, furin-cleavage-site adaptation and neutralization using serum from acutely infected hospitalized COVID-19 patients
2020
Artificial intelligence ‐ driven sustainable development: Examining organizational, technical, and processing approaches to achieving global goals
2023 Standout
Protein oligomer modeling guided by predicted interchain contacts in CASP14
2021 StandoutNobel
Identification of a Small Interface between the Methyltransferase and RNA Polymerase of NS5 that is Essential for Zika Virus Replication
2018 StandoutNobel
Graph neural networks: A review of methods and applications
2020 Standout
ColabFold: making protein folding accessible to all
2022 Standout
Mechanisms of SARS-CoV-2 entry into cells
2021 Standout
Empirical Scoring Functions for Structure-Based Virtual Screening: Applications, Critical Aspects, and Challenges
2018
Mechanism and medical implications of mammalian autophagy
2018 Standout
Exploring the potential of global protein–protein docking: an overview and critical assessment of current programs for automatic ab initio docking
2015
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
The ClusPro web server for protein–protein docking
2017 Standout
AI in health and medicine
2022 Standout
Improved prediction of protein-protein interactions using AlphaFold2
2022
Plasmodium UIS3 sequesters host LC3 to avoid elimination by autophagy in hepatocytes
2017
SAXS Data Alone can Generate High-Quality Models of Protein-Protein Complexes
2016
D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies
2020
Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes
2016
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
2015 Standout
Applications of contact predictions to structural biology
2017 StandoutNobel
Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals
2020 Standout
Deciphering interaction fingerprints from protein molecular surfaces using geometric deep learning
2019
Development of therapeutic antibodies for the treatment of diseases
2020 Standout
Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH
2022 StandoutNobel
Antibody humanization by structure-based computational protein design
2015
A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations
2018 StandoutNobel
Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design
2018 StandoutNobel
The cryo-EM structure of the human uromodulin filament core reveals a unique assembly mechanism
2020
Designing a multi-epitope candidate vaccine by employing immunoinformatics approaches to control African swine fever spread
2022
A knowledge-based scoring function to assess quaternary associations of proteins
2020
Integrative computational modeling of protein interactions
2014
AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings
2021 Standout
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
GalaxyTongDock: Symmetric and asymmetric ab initio protein–protein docking web server with improved energy parameters
2019
Molecular Docking: Shifting Paradigms in Drug Discovery
2019 Standout
The structure of the binary methyltransferase-SAH complex from Zika virus reveals a novel conformation for the mechanism of mRNA capping
2017
Computational modeling of membrane proteins
2014
A substitution in the glutathione reductase lowers electron leakage and inflammation in modern humans
2022 StandoutNobel
A benchmark testing ground for integrating homology modeling and protein docking
2016
Predicting Protein–Protein Interactions from the Molecular to the Proteome Level
2016
Protein interface prediction using graph convolutional networks
2017
Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking
2019 StandoutNobel
Structural basis for Zika envelope domain III recognition by a germline version of a recurrent neutralizing antibody
2020 StandoutNobel
Shape complementarity and hydrogen bond preferences in protein–protein interfaces: implications for antibody modeling and protein–protein docking
2016
Characterization of γδ T Cells in Intestinal Mucosa From Patients With Early-Onset or Long-Standing Inflammatory Bowel Disease and Their Correlation With Clinical Status
2019
Works of Anna Vangone being referenced
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2
2017
Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2
2015
CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions
2012
D936Y and Other Mutations in the Fusion Core of the SARS-CoV-2 Spike Protein Heptad Repeat 1: Frequency, Geographical Distribution, and Structural Effect
2021
Ranking multiple docking solutions based on the conservation of inter‐residue contacts
2013
Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1
2016
COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes
2011
Using a consensus approach based on the conservation of inter‐residue contacts to rank CAPRI models
2013
Prevention of Vγ9Vδ2 T Cell Activation by a Vγ9Vδ2 TCR Nanobody
2016
Fragment-based modeling of membrane protein loops: Successes, failures, and prospects for the future
2013